Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0055200 Salix brachista HOM05D000883 ORTHO05D008274 6.0e-94 347.4 169 100.0
Sabra05G0144900 Salix brachista HOM05D000883 ORTHO05D008274 4.1e-50 201.8 176 63.6
Manes.18G089600 Manihot esculenta HOM05D001639 ORTHO05D008274 5.3e-50 201.4 175 62.9
Potri.005G189600 Populus trichocarpa HOM05D000883 ORTHO05D008274 2.7e-49 199.1 176 63.6
TWI32G0210 Tripterygium wilfordii HOM05D001639 ORTHO05D008274 4.7e-46 188.3 175 58.9
Cpa.g.sc49.41 Carica papaya HOM05D001639 ORTHO05D008274 1.8e-45 186.4 175 59.4
Haze_17732 Corylus avellana HOM05D001639 ORTHO05D008274 3.0e-45 185.7 177 58.2
Duzib093G1790 Durio zibethinus HOM05D001639 ORTHO05D008274 1.5e-44 183.3 173 59.5
Ciclev10001437m.g Citrus clementina HOM05D000883 ORTHO05D008274 2.0e-44 183.0 175 57.7
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 5.7e-44 181.4 169 58.0
Cfa018342 Carpinus fangiana HOM05D001639 ORTHO05D008274 1.7e-43 179.9 175 57.1
CiPaw.15G019200 Carya illinoinensis HOM05D001639 ORTHO05D008274 2.2e-43 179.5 175 57.1
TAR381G0772 Trochodendron aralioides HOM05D001639 ORTHO05D008274 2.2e-43 179.5 175 57.1
Thecc.08G147300 Theobroma cacao HOM05D001639 ORTHO05D008274 2.8e-43 179.1 173 59.0
Cc10_g14130 Coffea canephora HOM05D001639 ORTHO05D008274 3.7e-43 178.7 171 57.9
COL.COLO4_08290 Corchorus olitorius HOM05D001639 ORTHO05D008274 3.7e-43 178.7 173 58.4
CSS0033416 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D008274 4.8e-43 178.3 176 57.4
CSS0048578 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D008274 4.8e-43 178.3 176 57.4
Eucgr.F04259 Eucalyptus grandis HOM05D001639 ORTHO05D008274 4.8e-43 178.3 169 58.0
Gohir.D03G060611 Gossypium hirsutum HOM05D001639 ORTHO05D008274 4.8e-43 178.3 174 57.5
Lj7P367T38 Lonicera japonica HOM05D001639 ORTHO05D008274 4.8e-43 178.3 163 59.5
CAN.G715.7 Capsicum annuum HOM05D001639 ORTHO05D008274 6.3e-43 177.9 171 58.5
Lalb_Chr19g0130371 Lupinus albus HOM05D000883 ORTHO05D008274 6.3e-43 177.9 176 56.8
Peaxi162Scf00263g00927 Petunia axillaris HOM05D001639 ORTHO05D008274 6.3e-43 177.9 175 58.3
Aqoxy6G00384 Aquilegia oxysepala HOM05D001639 ORTHO05D008274 8.3e-43 177.6 175 56.0
Gorai.013G111000 Gossypium raimondii HOM05D001639 ORTHO05D008274 1.1e-42 177.2 174 56.9
Oeu014480.1 Olea europaea HOM05D001639 ORTHO05D008274 1.1e-42 177.2 176 55.7
Atru.chr13.2240 Acer truncatum HOM05D001639 ORTHO05D008274 1.8e-42 176.4 173 56.6
Gohir.A08G038900 Gossypium hirsutum HOM05D001639 ORTHO05D008274 1.8e-42 176.4 174 56.9
Gorai.004G048600 Gossypium raimondii HOM05D001639 ORTHO05D008274 1.8e-42 176.4 174 56.9
arahy.Tifrunner.gnm1.ann1.8L230K Arachis hypogaea HOM05D000883 ORTHO05D008274 3.1e-42 175.6 176 55.7
THA.LOC104798867 Tarenaya hassleriana HOM05D001639 ORTHO05D008274 3.1e-42 175.6 170 57.6
Sopen04g026960 Solanum pennellii HOM05D000883 ORTHO05D008274 5.4e-42 174.9 171 57.9
PGSC0003DMG401000790 Solanum tuberosum HOM05D000883 ORTHO05D008274 5.4e-42 174.9 171 57.9
PGSC0003DMG402000790 Solanum tuberosum HOM05D000883 ORTHO05D008274 5.4e-42 174.9 171 57.9
AT5G42130 Arabidopsis thaliana HOM05D001639 ORTHO05D008274 1.6e-41 173.3 174 55.2
AL8G19740 Arabidopsis lyrata HOM05D000883 ORTHO05D008274 2.0e-41 172.9 174 55.2
DCAR_014419 Daucus carota HOM05D001639 ORTHO05D008274 2.7e-41 172.6 168 58.3
PGR044G2310 Punica granatum HOM05D001639 ORTHO05D008274 2.7e-41 172.6 167 58.7
Gohir.D08G049100 Gossypium hirsutum HOM05D000883 ORTHO05D008274 3.5e-41 172.2 174 56.3
Lsat_1_v5_gn_9_40341 Lactuca sativa HOM05D001639 ORTHO05D008274 4.5e-41 171.8 161 59.6
Nitab4.5_0000299g0290 Nicotiana tabacum HOM05D001639 ORTHO05D008274 4.5e-41 171.8 169 57.4
Sed0024209 Sechium edule HOM05D000883 ORTHO05D008274 4.5e-41 171.8 176 52.3
Prupe.8G024200 Prunus persica HOM05D001639 ORTHO05D008274 7.7e-41 171.0 163 57.1
Sc02g0004300 Simmondsia chinensis HOM05D001639 ORTHO05D008274 7.7e-41 171.0 169 56.2
MSTRG.1084 Avicennia marina HOM05D001639 ORTHO05D008274 1.0e-40 170.6 174 56.9
SGA_v2.0_scaffold48G17996 Striga asiatica HOM05D001639 ORTHO05D008274 1.3e-40 170.2 172 55.2
MELO3C008392.2 Cucumis melo HOM05D000883 ORTHO05D008274 1.7e-40 169.9 176 53.4
CsaV3_6G029660 Cucumis sativus L. HOM05D000883 ORTHO05D008274 1.7e-40 169.9 176 54.0
PSO541G2792 Papaver somniferum HOM05D001639 ORTHO05D008274 1.7e-40 169.9 170 54.7
Gohir.A02G112700 Gossypium hirsutum HOM05D001639 ORTHO05D008274 2.3e-40 169.5 164 57.9
Actinidia01148 Actinidia chinensis HOM05D001639 ORTHO05D008274 2.9e-40 169.1 167 57.5
Nn5g28676 Nelumbo nucifera HOM05D001639 ORTHO05D008274 2.9e-40 169.1 171 55.6
Carub.0008s0493 Capsella rubella HOM05D000883 ORTHO05D008274 3.8e-40 168.7 163 57.1
Migut.C00995 Erythranthe guttata HOM05D001639 ORTHO05D008274 3.8e-40 168.7 170 57.1
FvH4_2g14300 Fragaria vesca HOM05D001639 ORTHO05D008274 5.0e-40 168.3 171 55.0
MD05G1019200 Malus domestica HOM05D001639 ORTHO05D008274 6.6e-40 167.9 160 56.2
ClCG08G006600 Citrullus lanatus HOM05D000883 ORTHO05D008274 8.6e-40 167.5 176 51.7
Glyma.02G084300 Glycine max HOM05D000883 ORTHO05D008274 8.6e-40 167.5 174 52.9
RcHm_v2.0_Chr6g0276601 Rosa chinensis HOM05D000883 ORTHO05D008274 8.6e-40 167.5 171 55.0
ATR0772G095 Amborella trichopoda HOM05D000883 ORTHO05D008274 1.1e-39 167.2 173 53.2
AUR62026753 Chenopodium quinoa HOM05D000883 ORTHO05D008274 1.1e-39 167.2 167 54.5
FAN20G0611 Fragaria x ananassa HOM05D000883 ORTHO05D008274 1.9e-39 166.4 171 54.4
Aa31LG9G12280 Aethionema arabicum HOM05D000189 ORTHO05D000474 2.5e-39 166.0 167 55.1
Thhalv10018646m.g Eutrema salsugineum HOM05D000883 ORTHO05D008274 2.5e-39 166.0 167 54.5
Lj2g0013114 Lotus japonicus HOM05D000883 ORTHO05D008274 2.5e-39 166.0 176 51.7
CARHR284310 Cardamine hirsuta HOM05D001639 ORTHO05D008274 3.3e-39 165.6 167 54.5
HanXRQChr11g0320361 Helianthus annuus HOM05D001639 ORTHO05D008274 3.3e-39 165.6 162 58.0
PSO675G7229 Papaver somniferum HOM05D001639 ORTHO05D008274 3.3e-39 165.6 171 52.6
QL02p024608 Quercus lobata HOM05D001639 ORTHO05D008274 4.2e-39 165.2 175 56.0
arahy.Tifrunner.gnm1.ann1.8SN94U Arachis hypogaea HOM05D011683 ORTHO05D008274 5.5e-39 164.9 170 55.9
FAN15G2052 Fragaria x ananassa HOM05D000883 ORTHO05D008274 5.5e-39 164.9 167 55.1
AUR62013522 Chenopodium quinoa HOM05D000883 ORTHO05D008274 9.5e-39 164.1 167 52.7
VMungo0464G0855 Vigna mungo HOM05D000883 ORTHO05D008274 1.6e-38 163.3 170 54.1
CANSAT25G1890 Cannabis sativa HOM05D000883 ORTHO05D008274 2.8e-38 162.5 172 52.9
Phvul.004G099800 Phaseolus vulgaris HOM05D000883 ORTHO05D008274 3.6e-38 162.2 170 53.5
SalBow7G2168 Salvia bowleyana HOM05D001639 ORTHO05D008274 4.7e-38 161.8 168 56.0
SalBow7G3935 Salvia bowleyana HOM05D001639 ORTHO05D008274 4.7e-38 161.8 168 56.0
Psat1g106760 Pisum sativum HOM05D000883 ORTHO05D008274 1.8e-37 159.8 170 50.6
DCAR_005701 Daucus carota HOM05D000883 ORTHO05D008274 2.3e-37 159.5 160 53.8
CDE06G0876 Ceratophyllum demersum HOM05D000645 ORTHO05D008274 4.0e-37 158.7 170 50.0
Sed0025312 Sechium edule HOM05D000883 ORTHO05D008274 2.6e-36 156.0 170 49.4
MBI19_g06155_MAGBIO Magnolia biondii HOM05D000883 ORTHO05D008274 5.7e-36 154.8 168 53.0
Sp1g03830 Schrenkiella parvula HOM05D000883 ORTHO05D008274 7.5e-36 154.5 174 51.1
AUR62035553 Chenopodium quinoa HOM05D001639 ORTHO05D008274 9.8e-36 154.1 159 54.1
Medtr6g034515 Medicago truncatula HOM05D000883 ORTHO05D008274 9.8e-36 154.1 173 49.1
Ca_19333_v3 Cicer arietinum L. HOM05D001639 ORTHO05D008274 1.3e-35 153.7 176 48.3
A10p03400 Brassica napus HOM05D000883 ORTHO05D008274 2.2e-35 152.9 168 52.4
BraA10t42616Z Brassica rapa HOM05D000883 ORTHO05D008274 2.2e-35 152.9 168 52.4
HPP92_027066 Vanilla planifolia HOM05D001639 ORTHO05D008274 2.2e-35 152.9 164 51.8
GSVIVG01001666001 Vitis vinifera HOM05D001639 ORTHO05D008274 2.8e-35 152.5 155 54.8
BolC5t29094H Brassica oleracea HOM05D000883 ORTHO05D008274 6.3e-35 151.4 168 51.8
C05p03120 Brassica napus HOM05D000883 ORTHO05D008274 1.1e-34 150.6 167 52.1
AUR62006073 Chenopodium quinoa HOM05D000442 ORTHO05D007032 1.8e-34 149.8 159 52.8
Solyc04g071010.4 Solanum lycopersicum HOM05D000883 ORTHO05D008274 1.8e-34 149.8 122 64.8
Ah.05g167630 Amaranthus hybridus HOM05D001639 ORTHO05D008274 9.2e-34 147.5 159 50.9
Dinv41106 Davidia involucrata HOM05D001639 ORTHO05D008274 9.2e-34 147.5 147 57.8
MD10G1020700 Malus domestica HOM05D001639 ORTHO05D008274 1.6e-33 146.7 111 65.8
SEGI_38715 Sequoiadendron giganteum HOM05D000883 ORTHO05D008274 4.0e-29 132.1 165 47.9
TPR.G36635 Trifolium pratense HOM05D000883 ORTHO05D008274 4.0e-29 132.1 164 48.2
SHI09429 Sapria himalayana HOM05D000883 ORTHO05D008274 1.9e-26 123.2 141 50.4
SMO119G0121 Selaginella moellendorffii HOM05D001639 ORTHO05D008274 9.2e-26 120.9 169 43.2
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 2.7e-25 119.4 135 50.4
Os01g0964900 Oryza sativa ssp. japonica HOM05D000883 ORTHO05D008274 2.3e-24 116.3 160 45.0
AagrBONN_evm.TU.Sc2ySwM_344.278 Anthoceros agrestis HOM05D001639 ORTHO05D008274 8.6e-24 114.4 190 38.4
AagrBONN_evm.TU.Sc2ySwM_344.286 Anthoceros agrestis HOM05D001639 ORTHO05D008274 8.6e-24 114.4 190 38.4
Zm00001eb140180 Zea mays HOM05D000883 ORTHO05D008274 5.6e-23 111.7 164 43.9
Mapoly0028s0023 Marchantia polymorpha HOM05D001639 ORTHO05D008274 3.6e-22 109.0 188 35.6
CsaV3_6G030840 Cucumis sativus L. HOM05D001639 ORTHO05D008274 1.8e-21 106.7 132 49.2
Gohir.D12G020701 Gossypium hirsutum HOM05D000883 ORTHO05D022760 5.2e-21 105.1 67 73.1
Glyma.19G036500 Glycine max HOM05D000883 ORTHO05D022760 6.4e-19 98.2 66 69.7
Sp5g25580 Schrenkiella parvula HOM05D000883 ORTHO05D008274 1.1e-18 97.4 105 45.7
unitig_26.g9898 Utricularia gibba HOM05D000883 ORTHO05D008274 8.6e-16 87.8 63 60.3
Mapoly0033s0136 Marchantia polymorpha HOM05D001639 ORTHO05D008274 1.2e-14 84.0 184 31.5
EL10Ac3g05259 Beta vulgaris HOM05D001639 ORTHO05D008274 2.1e-14 83.2 103 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1476 Anthoceros agrestis HOM05D001639 ORTHO05D008274 1.8e-13 80.1 213 29.6
PGSC0003DMG400008617 Solanum tuberosum HOM05D000883 ORTHO05D008274 4.0e-13 79.0 99 48.5
Solyc04g071290.4 Solanum lycopersicum HOM05D000257 ORTHO05D008537 4.4e-12 75.5 99 50.5
Gohir.D01G115150 Gossypium hirsutum HOM05D000883 ORTHO05D022760 1.3e-11 73.9 46 73.9
Gohir.D04G188550 Gossypium hirsutum HOM05D000883 ORTHO05D022760 1.3e-11 73.9 46 73.9
Gohir.D11G252850 Gossypium hirsutum HOM05D000883 ORTHO05D022760 1.3e-11 73.9 46 73.9
Gorai.007G271500 Gossypium raimondii HOM05D000883 ORTHO05D022760 1.3e-11 73.9 46 73.9
Nitab4.5_0004019g0040 Nicotiana tabacum HOM05D001639 ORTHO05D008274 3.7e-11 72.4 152 35.5
CBR_g32177 Chara braunii HOM05D001639 ORTHO05D008274 5.4e-10 68.6 178 27.5
Pp3c17_9870 Physcomitrium patens HOM05D000883 ORTHO05D026602 2.3e-08 63.2 90 40.0
Mapoly0036s0019 Marchantia polymorpha HOM05D000883 ORTHO05D026602 6.6e-08 61.6 69 52.2
AUR62034889 Chenopodium quinoa HOM05D000883 ORTHO05D003260 8.6e-08 61.2 105 38.1
AUR62026632 Chenopodium quinoa HOM05D000883 ORTHO05D003260 5.6e-07 58.5 105 38.1
Pp3c22_810 Physcomitrium patens HOM05D001639 ORTHO05D008274 5.6e-07 58.5 154 30.5
CBR_g40863 Chara braunii HOM05D001639 ORTHO05D026602 7.3e-07 58.2 106 36.8
CBR_g52044 Chara braunii HOM05D001203 ORTHO05D001059 1.6e-06 57.0 94 37.2
Migut.C00141 Erythranthe guttata HOM05D000883 ORTHO05D003260 2.1e-06 56.6 64 48.4
Mapoly0068s0095 Marchantia polymorpha HOM05D000883 ORTHO05D003260 2.1e-06 56.6 97 37.1
BcaB07g33032 Brassica carinata HOM05D000883 ORTHO05D003260 3.6e-06 55.8 64 50.0
A09p32420 Brassica napus HOM05D000883 ORTHO05D003260 3.6e-06 55.8 64 50.0
BraA09t38782Z Brassica rapa HOM05D000883 ORTHO05D003260 3.6e-06 55.8 64 50.0
CSS0004119 Camellia sinensis var. sinensis HOM05D001203 ORTHO05D001059 3.6e-06 55.8 101 32.7
Lsat_1_v5_gn_6_101420 Lactuca sativa HOM05D000883 ORTHO05D003260 3.6e-06 55.8 71 46.5
Oeu051261.1 Olea europaea HOM05D000883 ORTHO05D008274 3.6e-06 55.8 104 40.4
CSS0010454 Camellia sinensis var. sinensis HOM05D001203 ORTHO05D001059 4.7e-06 55.5 101 32.7
ECA246G2724 Erigeron canadensis HOM05D000883 ORTHO05D003260 6.2e-06 55.1 71 46.5
Gorai.006G081100 Gossypium raimondii HOM05D001203 ORTHO05D001059 6.2e-06 55.1 119 32.8
Rhsim04G0245800 Rhododendron simsii HOM05D001203 ORTHO05D001059 6.2e-06 55.1 77 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4501 Anthoceros agrestis HOM05D000883 ORTHO05D026602 8.1e-06 54.7 112 33.9
BolC6t36332H Brassica oleracea HOM05D000883 ORTHO05D003260 8.1e-06 54.7 64 48.4
Gohir.D09G066600 Gossypium hirsutum HOM05D001203 ORTHO05D001059 8.1e-06 54.7 100 35.0


User provided reference genes

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