Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 5.6e-203 710.7 350 100.0
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 4.9e-191 671.0 351 93.7
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.7e-183 646.0 348 90.5
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 2.7e-157 558.9 376 75.8
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 7.2e-150 534.3 350 75.1
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 8.0e-149 530.8 352 73.6
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 1.8e-148 529.6 352 72.4
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 5.2e-148 528.1 352 72.2
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 1.3e-146 523.5 349 75.9
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 1.8e-145 519.6 352 72.4
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 3.1e-145 518.8 354 73.2
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 4.1e-145 518.5 351 74.6
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 5.3e-145 518.1 353 71.1
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 4.5e-144 515.0 353 72.5
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 5.9e-144 514.6 351 70.4
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 7.7e-144 514.2 351 70.9
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 1.1e-142 510.4 351 71.5
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 1.9e-142 509.6 355 71.8
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 3.2e-142 508.8 351 73.5
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 5.5e-142 508.1 350 70.6
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 7.2e-142 507.7 349 70.2
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 1.6e-141 506.5 349 69.9
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 1.6e-141 506.5 355 68.7
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 2.7e-141 505.8 349 69.9
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 2.7e-141 505.8 349 69.9
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 3.6e-141 505.4 351 70.4
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 3.6e-141 505.4 355 71.0
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 3.6e-141 505.4 352 71.0
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 4.7e-141 505.0 353 72.2
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 6.1e-141 504.6 349 69.6
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 8.0e-141 504.2 352 68.5
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 1.5e-139 500.0 351 71.5
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 7.5e-139 497.7 355 70.1
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 7.5e-139 497.7 355 70.1
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 1.3e-138 496.9 355 69.9
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 6.3e-138 494.6 358 68.4
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 1.1e-137 493.8 350 72.0
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 3.1e-137 492.3 356 69.9
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 2.7e-136 489.2 353 67.4
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 1.3e-135 486.9 350 71.1
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 1.7e-135 486.5 353 70.0
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 2.9e-135 485.7 354 69.5
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 9.5e-134 480.7 354 66.7
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 9.5e-134 480.7 368 66.6
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 2.8e-133 479.2 353 68.0
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 6.1e-133 478.0 349 67.0
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 6.1e-133 478.0 354 66.4
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 1.4e-132 476.9 354 66.1
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 4.0e-132 475.3 355 66.2
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 1.2e-131 473.8 344 68.6
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.2e-130 469.5 352 68.5
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 3.7e-130 468.8 367 64.0
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 7.0e-129 464.5 362 67.4
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 7.0e-129 464.5 362 67.4
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 4.5e-128 461.8 350 67.4
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 1.7e-127 459.9 353 63.5
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 3.8e-127 458.8 352 67.6
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 1.9e-126 456.4 296 73.6
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 1.9e-126 456.4 355 62.8
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 4.7e-125 451.8 368 64.1
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 1.0e-124 450.7 368 64.9
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.0e-124 449.1 368 62.0
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 3.0e-124 449.1 352 64.5
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 3.0e-124 449.1 357 62.7
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 8.9e-124 447.6 358 64.5
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 1.2e-123 447.2 357 62.7
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 1.2e-123 447.2 357 62.7
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 7.5e-123 444.5 357 63.3
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 1.7e-122 443.4 359 62.7
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.7e-122 443.4 369 60.4
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 2.9e-122 442.6 371 60.6
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 6.4e-122 441.4 363 62.5
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 5.4e-121 438.3 363 59.8
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 7.0e-121 438.0 364 61.3
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.6e-120 436.8 284 72.9
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 4.6e-120 435.3 354 64.7
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.5e-118 430.3 365 58.9
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 1.9e-118 429.9 364 58.8
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 3.4e-115 419.1 371 57.1
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 1.1e-113 414.1 298 66.4
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 4.1e-113 412.1 356 59.8
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 4.1e-113 412.1 352 58.8
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 6.6e-111 404.8 352 58.8
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 1.1e-110 404.1 277 70.8
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 2.5e-110 402.9 371 55.0
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 3.6e-109 399.1 366 55.7
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 2.4e-105 386.3 364 54.9
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 2.1e-104 383.3 365 55.3
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 5.1e-103 378.6 283 64.7
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 3.4e-99 365.9 353 56.4
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 7.1e-97 358.2 358 54.5
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 7.3e-94 348.2 253 66.8
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 1.6e-93 347.1 280 63.6
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 2.4e-89 333.2 365 51.5
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 2.8e-85 319.7 392 44.9
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 3.1e-84 316.2 199 74.9
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 3.0e-79 299.7 216 68.1
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 8.7e-79 298.1 376 44.9
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.3e-78 296.2 197 69.5
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 7.4e-78 295.0 370 46.5
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 5.8e-75 285.4 350 48.9
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 1.3e-74 284.3 321 48.0
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 5.7e-62 242.3 165 70.9
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 3.7e-53 213.0 259 45.2
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 3.1e-52 209.9 233 47.6
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 7.7e-51 205.3 141 69.5
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 8.5e-50 201.8 300 36.3
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 2.2e-45 187.2 179 52.5
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.9e-39 166.4 229 42.4
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.0e-38 164.1 123 68.3
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 4.4e-38 162.9 110 70.9
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 7.4e-38 162.2 224 43.8
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 2.1e-32 144.1 207 42.0
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 1.7e-26 124.4 94 66.0
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 2.2e-26 124.0 92 66.3
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 4.7e-24 116.3 144 43.1
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 4.0e-23 113.2 88 60.2
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 2.8e-21 107.1 90 55.6
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 4.1e-20 103.2 78 66.7
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 7.7e-19 99.0 70 61.4
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 2.3e-18 97.4 87 54.0
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 1.4e-15 88.2 102 46.1
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 1.5e-14 84.7 61 62.3
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 1.5e-14 84.7 103 43.7
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 5.7e-14 82.8 278 28.1
SGA_v2.0_scaffold17G07917 Striga asiatica HOM05D006114 ORTHO05D007609 2.8e-13 80.5 156 40.4
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 4.1e-12 76.6 58 62.1
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 5.4e-12 76.3 356 25.3
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.7e-10 71.2 284 25.4
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.9e-09 67.8 342 24.9
Pp3c14_15770 Physcomitrium patens HOM05D003005 ORTHO05D004939 1.9e-09 67.8 287 23.0
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 5.6e-09 66.2 284 24.6
Zm00001eb433190 Zea mays HOM05D004302 ORTHO05D004939 1.2e-08 65.1 301 25.9
FvH4_6g34680 Fragaria vesca HOM05D006114 ORTHO05D007609 2.8e-08 63.9 50 70.0
Mapoly0019s0019 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.8e-08 63.9 378 24.3
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 1.4e-07 61.6 339 23.0
Migut.K00952 Erythranthe guttata HOM05D002809 ORTHO05D004563 1.8e-07 61.2 308 25.3
Pp3c10_20160 Physcomitrium patens HOM05D003005 ORTHO05D004563 1.8e-07 61.2 366 24.0
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 6.8e-07 59.3 291 23.7
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 2.6e-06 57.4 308 24.4
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 2.6e-06 57.4 370 25.4
Sc20g0003450 Simmondsia chinensis HOM05D006114 ORTHO05D007609 3.4e-06 57.0 45 64.4
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 4.4e-06 56.6 307 23.8


User provided reference genes

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