Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 3.8e-81 305.1 189 100.0
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 8.9e-70 267.3 189 85.7
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.5e-64 249.2 189 84.1
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.1e-58 229.6 190 81.6
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 2.3e-57 226.1 189 79.4
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 4.7e-55 218.4 191 66.0
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.2e-53 213.8 190 64.2
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 4.4e-53 211.8 191 75.9
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.9e-52 209.1 193 72.5
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 4.9e-52 208.4 190 63.7
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.9e-52 208.4 191 62.8
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.4e-51 204.9 190 73.7
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 9.2e-51 204.1 189 69.3
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 9.2e-51 204.1 189 61.9
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 9.2e-51 204.1 192 72.9
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 9.2e-51 204.1 190 73.7
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.3e-49 199.5 189 73.5
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.3e-49 199.5 190 63.7
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 3.9e-49 198.7 190 62.6
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 5.1e-49 198.4 191 70.2
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 5.1e-49 198.4 191 74.3
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 5.1e-49 198.4 190 60.0
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 6.6e-49 198.0 189 68.8
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.1e-48 197.2 194 61.9
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.1e-48 197.2 193 72.0
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.1e-48 197.2 200 58.5
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.5e-48 196.1 189 72.5
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 5.6e-48 194.9 193 67.4
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 7.3e-48 194.5 192 60.9
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.2e-47 193.7 192 60.4
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.6e-47 193.4 190 65.3
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 2.1e-47 193.0 198 61.1
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 2.1e-47 193.0 194 73.2
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 3.6e-47 192.2 192 59.9
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 6.2e-47 191.4 190 59.5
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 8.1e-47 191.0 191 72.3
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.4e-46 190.3 195 72.3
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 4.0e-46 188.7 190 64.2
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 5.2e-46 188.3 196 70.4
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 8.9e-46 187.6 191 70.7
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-45 187.2 191 64.9
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.2e-45 187.2 191 63.4
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.5e-45 186.8 191 67.0
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.5e-45 186.8 191 67.5
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 2.0e-45 186.4 197 71.1
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 5.8e-45 184.9 193 65.8
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 9.9e-45 184.1 191 69.1
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 1.3e-44 183.7 194 57.2
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.3e-44 183.7 195 70.8
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.3e-44 183.7 192 63.5
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.3e-44 183.7 192 56.8
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.7e-44 183.3 194 66.0
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.2e-44 183.0 193 65.3
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 2.9e-44 182.6 190 64.7
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 2.9e-44 182.6 195 64.1
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 2.9e-44 182.6 192 56.8
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.9e-44 182.6 142 80.3
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 3.8e-44 182.2 194 69.1
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 4.9e-44 181.8 191 65.4
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 4.9e-44 181.8 189 64.0
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 1.1e-43 180.6 197 70.1
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.1e-43 180.6 189 65.6
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.1e-43 180.6 190 59.5
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.9e-43 179.9 191 66.5
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.9e-43 179.9 189 65.6
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.9e-43 179.9 152 69.7
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.4e-43 179.5 191 63.4
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 3.2e-43 179.1 189 62.4
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 4.2e-43 178.7 190 65.8
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 4.2e-43 178.7 189 69.8
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 4.2e-43 178.7 189 69.8
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 5.4e-43 178.3 191 66.0
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 7.1e-43 177.9 193 69.9
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 9.2e-43 177.6 199 56.3
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 9.2e-43 177.6 151 74.2
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.2e-42 177.2 190 64.7
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.6e-42 176.8 191 64.4
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.6e-42 176.8 184 69.6
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.7e-42 176.0 191 64.9
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 2.7e-42 176.0 190 66.8
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 3.5e-42 175.6 190 62.6
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 3.5e-42 175.6 191 62.3
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 6.0e-42 174.9 189 67.7
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 7.8e-42 174.5 190 58.9
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 7.8e-42 174.5 191 63.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.0e-41 174.1 190 65.8
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.7e-41 173.3 189 66.7
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.7e-41 173.3 138 81.2
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.7e-41 173.3 191 61.8
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 2.3e-41 172.9 190 66.8
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.3e-41 172.9 155 72.3
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 3.0e-41 172.6 198 65.7
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 3.9e-41 172.2 192 64.1
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 3.9e-41 172.2 148 68.9
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 6.6e-41 171.4 191 61.3
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 6.6e-41 171.4 189 63.0
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 8.7e-41 171.0 176 64.2
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.5e-40 170.2 191 60.7
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 1.5e-40 170.2 190 60.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.9e-40 169.9 193 61.1
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.6e-40 168.3 191 62.8
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 9.6e-40 167.5 147 71.4
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.6e-39 166.8 188 55.9
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.1e-39 166.4 191 63.9
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 3.6e-39 165.6 189 68.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.6e-39 165.6 191 68.1
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 4.0e-38 162.2 189 58.7
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 4.0e-38 162.2 184 60.3
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.2e-37 160.6 191 51.8
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.0e-37 159.8 189 61.9
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 3.8e-36 155.6 192 59.4
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 6.4e-36 154.8 85 88.2
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 8.4e-36 154.5 224 56.2
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.1e-35 154.1 171 71.9
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.4e-35 153.7 190 56.8
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.9e-35 153.3 96 78.1
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.9e-35 153.3 192 59.4
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.9e-35 153.3 207 54.1
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 3.2e-35 152.5 191 60.7
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 9.3e-35 151.0 178 52.8
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.2e-34 150.6 193 50.3
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 2.7e-34 149.4 213 46.5
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 7.8e-34 147.9 87 82.8
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 8.7e-33 144.4 178 60.7
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.3e-28 130.6 75 85.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 6.4e-28 128.3 70 85.7
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 5.4e-27 125.2 69 82.6
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 3.5e-26 122.5 153 66.0
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 6.0e-26 121.7 150 62.0
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 4.0e-22 109.0 115 67.0
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 4.5e-21 105.5 173 53.8
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 5.8e-21 105.1 109 54.1
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 5.8e-21 105.1 82 61.0
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.3e-20 104.0 65 75.4
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.9e-20 102.8 70 74.3
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 6.4e-20 101.7 143 65.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 6.4e-20 101.7 187 49.2
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.4e-19 100.5 81 60.5
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.9e-19 100.1 121 63.6
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.3e-17 94.0 83 54.2
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 6.7e-17 91.7 83 50.6
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.8e-14 83.6 56 73.2
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.6e-10 70.5 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.7e-07 59.3 39 61.5


User provided reference genes

Program Settings