Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 2.1e-117 425.6 200 100.0
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 6.5e-47 191.4 305 41.6
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 1.6e-40 170.2 368 34.5
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 2.3e-23 113.2 112 55.4
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.9e-22 110.2 112 54.5
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 3.3e-22 109.4 109 57.8
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 2.8e-21 106.3 112 55.4
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 1.4e-20 104.0 111 48.6
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.8e-20 103.6 334 29.0
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.4e-17 92.0 112 49.1
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.2e-16 90.9 109 50.5
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 1.6e-16 90.5 109 44.0
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.6e-16 90.5 109 50.5
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 2.7e-16 89.7 109 45.0
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 3.5e-16 89.4 112 46.4
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 7.8e-16 88.2 107 46.7
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.0e-15 87.8 112 45.5
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 3.0e-15 86.3 112 42.0
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 5.1e-15 85.5 109 50.5
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 5.1e-15 85.5 109 50.5
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 8.6e-15 84.7 113 43.4
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 1.9e-14 83.6 371 24.0
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 2.5e-14 83.2 167 37.1
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 3.3e-14 82.8 113 46.0
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 4.3e-14 82.4 375 24.5
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 4.3e-14 82.4 125 44.8
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 5.6e-14 82.0 130 43.1
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 9.5e-14 81.3 109 42.2
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 9.5e-14 81.3 101 45.5
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 9.5e-14 81.3 102 50.0
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 1.2e-13 80.9 371 24.5
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.6e-13 80.5 102 47.1
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.1e-13 80.1 115 46.1
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.1e-13 80.1 115 46.1
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 2.8e-13 79.7 102 46.1
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 3.6e-13 79.3 100 46.0
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 3.6e-13 79.3 123 46.3
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 4.7e-13 79.0 108 48.1
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 2.4e-12 76.6 98 43.9
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 3.1e-12 76.3 100 43.0
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 4.0e-12 75.9 102 46.1
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 6.8e-12 75.1 97 44.3
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 6.8e-12 75.1 97 44.3
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 6.8e-12 75.1 102 43.1
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 6.8e-12 75.1 108 42.6
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.2e-11 74.3 99 41.4
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 1.2e-11 74.3 102 42.2
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 1.2e-11 74.3 103 41.7
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 1.2e-11 74.3 110 44.5
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.5e-11 73.9 97 43.3
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.5e-11 73.9 97 43.3
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.5e-11 73.9 96 44.8
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 1.5e-11 73.9 375 22.9
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 2.6e-11 73.2 108 46.3
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 3.4e-11 72.8 107 47.7
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 3.4e-11 72.8 100 42.0
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 3.4e-11 72.8 103 39.8
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 5.8e-11 72.0 88 42.0
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 9.9e-11 71.2 124 33.1
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 9.9e-11 71.2 98 42.9
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 9.9e-11 71.2 365 24.1
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 1.3e-10 70.9 88 43.2
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 1.7e-10 70.5 179 32.4
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 2.2e-10 70.1 106 45.3
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 2.9e-10 69.7 98 44.9
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 4.9e-10 68.9 102 44.1
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 4.9e-10 68.9 102 44.1
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 6.4e-10 68.6 107 45.8
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 8.4e-10 68.2 105 39.0
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 8.4e-10 68.2 83 42.2
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 2.4e-09 66.6 97 43.3
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 9.2e-09 64.7 64 45.3
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 1.2e-08 64.3 35 77.1
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 2.1e-08 63.5 37 70.3
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 2.1e-08 63.5 111 37.8
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.7e-08 63.2 63 44.4
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 3.5e-08 62.8 62 45.2
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 3.5e-08 62.8 92 39.1
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 3.5e-08 62.8 37 70.3
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 4.6e-08 62.4 89 40.4
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 4.6e-08 62.4 62 45.2
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 6.0e-08 62.0 35 71.4
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 7.8e-08 61.6 35 68.6
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 7.8e-08 61.6 37 67.6
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 7.8e-08 61.6 37 67.6
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.0e-07 61.2 37 64.9
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.0e-07 61.2 35 74.3
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.0e-07 61.2 35 71.4
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 1.0e-07 61.2 35 71.4
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 1.0e-07 61.2 104 40.4
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 1.3e-07 60.8 103 37.9
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.3e-07 60.8 36 66.7
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.3e-07 60.8 37 64.9
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.7e-07 60.5 36 66.7
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.7e-07 60.5 37 64.9
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 1.7e-07 60.5 35 62.9
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 1.7e-07 60.5 62 43.5
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.3e-07 60.1 35 65.7
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 3.0e-07 59.7 35 65.7
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.0e-07 59.7 37 62.2
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 3.0e-07 59.7 35 71.4
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 3.0e-07 59.7 35 71.4
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 3.9e-07 59.3 95 41.1
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 3.9e-07 59.3 37 62.2
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 5.1e-07 58.9 35 71.4
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.7e-07 58.2 89 38.2
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.7e-07 58.2 37 59.5
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 8.7e-07 58.2 31 77.4
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.5e-06 57.4 89 39.3
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.9e-06 57.0 31 77.4
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 3.3e-06 56.2 36 66.7
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 4.3e-06 55.8 31 71.0
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 4.3e-06 55.8 31 71.0
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 9.6e-06 54.7 103 36.9


User provided reference genes

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