Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 3.7e-219 764.6 396 100.0
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.4e-85 320.9 182 91.8
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 7.8e-68 261.9 182 76.9
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 4.4e-63 246.1 179 73.2
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 3.4e-47 193.4 182 62.1
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 1.3e-46 191.4 182 62.1
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 4.6e-44 183.0 177 63.3
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 1.0e-43 181.8 182 60.4
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 1.9e-42 177.6 182 59.9
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 5.6e-42 176.0 185 58.4
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 2.1e-41 174.1 182 54.9
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 1.4e-40 171.4 182 57.1
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 1.8e-40 171.0 183 57.4
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 4.0e-40 169.9 182 56.6
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 4.0e-40 169.9 182 56.6
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 1.5e-39 167.9 182 55.5
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 2.9e-38 163.7 166 59.0
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 4.2e-37 159.8 186 55.9
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 2.7e-36 157.1 182 52.7
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 7.9e-36 155.6 182 52.7
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 1.0e-35 155.2 182 53.3
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 6.7e-35 152.5 156 59.0
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 1.5e-34 151.4 182 53.8
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 3.3e-34 150.2 168 54.8
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 5.7e-34 149.4 155 60.0
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 6.2e-33 146.0 181 49.7
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 1.1e-32 145.2 188 50.5
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 1.8e-32 144.4 184 51.1
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 2.4e-32 144.1 125 65.6
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 3.1e-32 143.7 187 52.4
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 5.3e-32 142.9 181 52.5
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 6.9e-32 142.5 222 44.6
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 9.0e-32 142.1 222 44.6
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 1.5e-31 141.4 182 49.5
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 2.0e-31 141.0 181 51.4
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 2.0e-31 141.0 184 48.9
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 7.6e-31 139.0 158 55.7
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 1.0e-30 138.7 184 50.5
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.3e-30 138.3 182 47.8
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 2.2e-30 137.5 180 51.1
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 2.9e-30 137.1 107 69.2
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 2.9e-30 137.1 182 48.4
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 3.8e-30 136.7 136 61.0
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 5.0e-30 136.3 151 58.9
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 5.0e-30 136.3 151 58.9
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 6.5e-30 136.0 184 52.2
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 6.5e-30 136.0 184 50.5
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 6.5e-30 136.0 182 48.4
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 1.9e-29 134.4 184 51.6
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 1.9e-29 134.4 182 51.1
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 1.9e-29 134.4 116 64.7
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 4.2e-29 133.3 169 51.5
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 7.1e-29 132.5 104 69.2
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 9.3e-29 132.1 114 64.9
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 2.1e-28 131.0 107 71.0
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 3.5e-28 130.2 112 65.2
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 4.6e-28 129.8 121 66.1
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 6.1e-28 129.4 182 47.3
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 6.1e-28 129.4 184 47.8
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 7.9e-28 129.0 95 75.8
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 7.9e-28 129.0 95 75.8
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 1.0e-27 128.6 163 49.7
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 1.0e-27 128.6 184 48.9
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 1.0e-27 128.6 205 46.3
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 1.3e-27 128.3 86 79.1
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 1.3e-27 128.3 86 79.1
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 1.3e-27 128.3 86 79.1
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 1.3e-27 128.3 130 61.5
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 1.3e-27 128.3 182 45.1
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 1.3e-27 128.3 191 47.1
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 1.8e-27 127.9 182 47.3
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 2.3e-27 127.5 182 47.8
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 2.3e-27 127.5 162 52.5
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 3.0e-27 127.1 182 46.7
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 3.9e-27 126.7 118 62.7
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 1.5e-26 124.8 187 47.1
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 3.3e-26 123.6 125 58.4
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.3e-26 123.6 181 46.4
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.3e-26 123.6 181 46.4
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 4.3e-26 123.2 183 46.4
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 4.3e-26 123.2 128 60.2
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 5.7e-26 122.9 112 63.4
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 7.4e-26 122.5 86 77.9
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 7.4e-26 122.5 172 47.1
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 7.4e-26 122.5 87 75.9
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 7.4e-26 122.5 87 75.9
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 1.3e-25 121.7 86 74.4
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 1.6e-25 121.3 182 47.3
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 2.2e-25 120.9 182 44.5
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 2.8e-25 120.6 182 46.7
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 6.3e-25 119.4 86 73.3
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.3e-25 119.4 86 73.3
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.3e-25 119.4 86 73.3
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 6.3e-25 119.4 86 73.3
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 8.2e-25 119.0 184 43.5
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 1.1e-24 118.6 86 73.3
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.4e-24 118.2 130 58.5
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 1.8e-24 117.9 87 70.1
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 2.4e-24 117.5 86 72.1
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 5.3e-24 116.3 171 44.4
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 1.5e-23 114.8 86 67.4
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 3.8e-22 110.2 124 51.6
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 5.0e-22 109.8 85 67.1
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 8.5e-22 109.0 184 45.7
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 3.2e-21 107.1 85 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 7.9e-20 102.4 83 65.1
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 7.9e-20 102.4 83 65.1
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 3.3e-18 97.1 122 51.6
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 3.3e-18 97.1 103 56.3
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 9.7e-18 95.5 116 50.9
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 6.3e-17 92.8 65 75.4
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 3.8e-14 83.6 119 44.5
MCO05G280 Micromonas commoda HOM05D006901 ORTHO05D008582 7.2e-13 79.3 84 51.2
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.3e-11 74.3 87 51.7
Cre03.g176500 Chlamydomonas reinhardtii HOM05D006901 ORTHO05D008582 8.8e-11 72.4 127 40.2
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.1e-10 72.0 87 49.4
Potri.005G198400 Populus trichocarpa HOM05D007043 ORTHO05D008951 7.4e-10 69.3 84 58.3
Manes.18G095900 Manihot esculenta HOM05D007043 ORTHO05D008951 1.1e-08 65.5 84 54.8
Atru.chr13.1985 Acer truncatum HOM05D007043 ORTHO05D008951 3.1e-08 63.9 53 66.0
Ciclev10002599m.g Citrus clementina HOM05D007043 ORTHO05D008951 3.5e-07 60.5 53 64.2
PGR042G2421 Punica granatum HOM05D007043 ORTHO05D008951 3.5e-07 60.5 53 62.3
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 4.5e-07 60.1 56 55.4
VMungo0720G3009 Vigna mungo HOM05D007043 ORTHO05D008951 1.0e-06 58.9 53 56.6
Eucgr.F02676 Eucalyptus grandis HOM05D007043 ORTHO05D008951 1.3e-06 58.5 87 41.4
Cfa018265 Carpinus fangiana HOM05D007043 ORTHO05D008951 1.7e-06 58.2 53 60.4
DCAR_016685 Daucus carota HOM05D007043 ORTHO05D008951 1.7e-06 58.2 83 47.0
THA.LOC104800095 Tarenaya hassleriana HOM05D007043 ORTHO05D008951 2.9e-06 57.4 53 58.5
vmacro21135 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 2.9e-06 57.4 53 54.7
vmacro22650 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 2.9e-06 57.4 53 54.7
Haze_17823 Corylus avellana HOM05D007043 ORTHO05D008951 3.8e-06 57.0 53 60.4
FAN15G1248 Fragaria x ananassa HOM05D007043 ORTHO05D008951 3.8e-06 57.0 53 60.4
SHI09106 Sapria himalayana HOM05D007043 ORTHO05D008951 3.8e-06 57.0 52 63.5
vmacro21134 Vaccinium macrocarpon HOM05D007043 ORTHO05D008951 3.8e-06 57.0 53 54.7
Actinidia17764 Actinidia chinensis HOM05D007043 ORTHO05D008951 5.0e-06 56.6 53 58.5
FvH4_2g12860 Fragaria vesca HOM05D007043 ORTHO05D008951 5.0e-06 56.6 53 60.4
FAN20G1550 Fragaria x ananassa HOM05D007043 ORTHO05D008951 5.0e-06 56.6 53 60.4
FAN24G2827 Fragaria x ananassa HOM05D007043 ORTHO05D008951 5.0e-06 56.6 53 60.4
Gohir.A06G112300 Gossypium hirsutum HOM05D007043 ORTHO05D008951 5.0e-06 56.6 53 58.5
Hma1.2p1_0678F.1_g202140 Hydrangea macrophylla HOM05D007043 ORTHO05D008951 5.0e-06 56.6 87 46.0
MD10G1037900 Malus domestica HOM05D007043 ORTHO05D008951 5.0e-06 56.6 87 41.4
A07p37900 Brassica napus HOM05D007043 ORTHO05D008951 6.5e-06 56.2 86 46.5
MD05G1035600 Malus domestica HOM05D007043 ORTHO05D008951 6.5e-06 56.2 53 58.5
Phvul.007G084700 Phaseolus vulgaris HOM05D007043 ORTHO05D008951 6.5e-06 56.2 53 52.8
Aqoxy5G02008 Aquilegia oxysepala HOM05D007043 ORTHO05D008951 8.5e-06 55.8 53 56.6
CANSAT25G3234 Cannabis sativa HOM05D007043 ORTHO05D008951 8.5e-06 55.8 53 62.3


User provided reference genes

Program Settings