Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.1e-201 706.4 358 100.0
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 6.2e-149 531.2 340 83.2
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 2.0e-123 446.4 358 69.6
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 5.5e-121 438.3 345 70.4
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 8.9e-71 271.6 346 50.3
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 5.8e-70 268.9 342 51.2
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 6.4e-69 265.4 337 50.1
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 4.6e-67 259.2 333 49.8
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 3.0e-66 256.5 340 47.4
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 1.9e-65 253.8 328 49.1
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.5e-65 253.4 348 48.3
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 3.6e-64 249.6 345 48.7
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 3.6e-64 249.6 341 49.6
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 1.5e-62 244.2 343 45.8
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.5e-62 244.2 339 48.1
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.8e-62 242.3 337 47.2
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.8e-62 242.3 337 47.8
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 1.1e-60 238.0 248 58.1
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 5.4e-60 235.7 329 46.5
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 9.2e-60 235.0 342 45.0
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.0e-58 231.5 343 43.7
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.1e-57 228.0 335 44.8
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 4.7e-56 222.6 354 46.6
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 4.0e-55 219.5 282 50.7
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 2.0e-54 217.2 357 42.0
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 3.8e-53 213.0 348 44.0
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 5.1e-50 202.6 342 42.4
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 2.5e-49 200.3 350 44.0
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 3.3e-49 199.9 345 42.0
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 7.3e-49 198.7 343 41.1
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 3.6e-48 196.4 338 41.4
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 4.8e-48 196.1 323 46.1
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 4.8e-48 196.1 346 41.3
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.4e-47 194.5 343 41.7
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.8e-47 194.1 352 39.8
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.8e-47 194.1 358 39.9
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 5.3e-47 192.6 433 37.4
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 5.3e-47 192.6 338 41.1
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 6.9e-47 192.2 316 43.7
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.0e-46 190.7 309 43.7
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 3.4e-46 189.9 330 43.0
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 4.5e-46 189.5 346 39.9
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 9.9e-46 188.3 339 42.8
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 9.9e-46 188.3 338 40.8
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.2e-45 187.2 340 40.6
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.4e-45 185.7 270 45.2
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 1.1e-44 184.9 347 40.1
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.9e-44 184.1 334 43.7
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 5.4e-44 182.6 310 43.9
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 9.3e-44 181.8 310 41.9
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 3.5e-43 179.9 275 45.8
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 1.3e-42 177.9 349 39.3
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 5.6e-41 172.6 336 40.8
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 2.8e-40 170.2 305 41.3
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 4.8e-40 169.5 345 38.8
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 6.2e-40 169.1 272 46.0
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 1.1e-39 168.3 227 50.7
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.4e-39 167.9 360 38.3
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.4e-39 167.9 340 40.3
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 2.4e-39 167.2 334 42.2
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 5.3e-39 166.0 341 37.8
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.0e-38 164.1 332 40.1
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.3e-37 161.4 296 41.2
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 8.4e-37 158.7 349 38.4
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.1e-36 158.3 347 37.5
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 3.2e-36 156.8 299 41.5
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 9.3e-36 155.2 334 40.1
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 1.2e-35 154.8 350 38.0
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.2e-35 154.8 336 36.6
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 3.5e-35 153.3 348 38.5
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 3.5e-35 153.3 328 39.0
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 3.0e-34 150.2 336 37.8
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 6.7e-34 149.1 351 37.6
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.9e-33 147.5 345 38.6
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 2.5e-33 147.1 317 39.4
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 9.6e-33 145.2 262 44.3
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 1.6e-32 144.4 339 39.5
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.6e-32 144.4 332 37.3
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 2.8e-32 143.7 347 37.2
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 3.7e-32 143.3 336 36.9
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 6.2e-32 142.5 298 39.6
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.4e-31 141.4 266 42.5
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 1.4e-31 141.4 315 38.7
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 1.8e-31 141.0 321 34.3
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 2.4e-31 140.6 340 36.8
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 2.4e-31 140.6 341 37.0
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 6.9e-31 139.0 261 42.5
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.0e-30 137.5 333 35.1
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 2.0e-30 137.5 345 36.2
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 2.6e-30 137.1 272 42.6
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 3.4e-30 136.7 307 37.1
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.0e-29 135.2 266 42.5
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 2.9e-29 133.7 312 36.5
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 3.8e-29 133.3 342 36.5
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 6.5e-29 132.5 351 36.2
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 9.3e-28 128.6 349 35.0
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 9.3e-28 128.6 270 40.4
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.2e-27 128.3 166 45.8
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 3.5e-27 126.7 344 34.6
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 7.9e-27 125.6 327 33.6
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 7.9e-27 125.6 322 34.8
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 1.3e-26 124.8 340 34.4
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 1.8e-26 124.4 327 33.6
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 5.1e-26 122.9 279 39.1
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 8.7e-26 122.1 250 38.8
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.5e-25 121.3 346 33.8
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.9e-25 120.9 330 34.2
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.9e-25 120.9 345 33.9
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 3.3e-25 120.2 341 34.6
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 7.4e-25 119.0 282 36.5
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 9.7e-25 118.6 300 35.0
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 1.6e-24 117.9 235 36.6
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 2.2e-24 117.5 328 33.2
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 2.8e-24 117.1 361 34.1
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.7e-24 116.7 172 43.0
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 3.7e-24 116.7 356 32.0
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 8.2e-24 115.5 345 34.5
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 8.2e-24 115.5 314 33.8
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 8.2e-24 115.5 352 33.5
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 8.2e-24 115.5 80 73.8
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.4e-23 114.8 350 32.9
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 2.4e-23 114.0 283 36.7
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 3.1e-23 113.6 314 33.4
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 3.1e-23 113.6 328 34.8
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.1e-23 113.6 353 33.4
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 5.3e-23 112.8 351 31.9
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 5.3e-23 112.8 205 40.0
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 6.9e-23 112.5 117 56.4
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 9.0e-23 112.1 329 34.0
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 9.0e-23 112.1 356 34.0
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.5e-22 111.3 214 42.1
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 1.5e-22 111.3 324 34.0
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 1.5e-22 111.3 196 44.9
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.0e-22 110.9 297 34.0
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 2.6e-22 110.5 217 39.6
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 4.5e-22 109.8 304 32.6
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 5.9e-22 109.4 325 33.2
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.7e-21 107.8 283 35.3
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 2.2e-21 107.5 313 34.8
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 3.8e-21 106.7 331 33.2
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.8e-18 97.8 343 30.6
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.0e-18 97.1 98 58.2
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 3.0e-18 97.1 324 29.6
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 8.8e-18 95.5 86 59.3
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.3e-17 93.6 358 31.0
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 7.4e-17 92.4 323 32.2
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.3e-16 91.7 88 52.3
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 8.2e-16 89.0 79 57.0
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 4.5e-14 83.2 81 56.8
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.1e-12 78.6 62 54.8
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.2e-12 77.0 103 51.5
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 7.2e-12 75.9 223 34.5
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 9.4e-12 75.5 213 34.3
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 2.7e-11 73.9 272 32.7
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 6.1e-11 72.8 185 31.9
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 1.1e-09 68.6 176 33.5
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 5.3e-07 59.7 309 27.2
Ah.16g109020 Amaranthus hybridus HOM05D004643 ORTHO05D059934 3.5e-06 57.0 31 83.9


User provided reference genes

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