Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0036900 Salix brachista HOM05D005044 ORTHO05D006799 8.3e-117 424.1 275 100.0
Potri.002G045900 Populus trichocarpa HOM05D005044 ORTHO05D006799 5.2e-111 404.8 272 98.2
Sabra05G0166600 Salix brachista HOM05D005044 ORTHO05D006799 8.3e-101 370.9 272 80.1
Potri.005G217400 Populus trichocarpa HOM05D005044 ORTHO05D006799 9.5e-97 357.5 277 80.5
Prupe.8G232900 Prunus persica HOM05D005044 ORTHO05D006799 2.2e-85 319.7 275 74.5
Cpa.g.sc52.102 Carica papaya HOM05D005044 ORTHO05D006799 1.4e-84 317.0 284 73.2
TWI12G0479 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 8.6e-82 307.8 283 76.0
MD10G1193500 Malus domestica HOM05D005044 ORTHO05D006799 1.1e-81 307.4 275 72.4
Atru.chr5.1554 Acer truncatum HOM05D005044 ORTHO05D006799 1.5e-81 307.0 277 76.2
QL12p042617 Quercus lobata HOM05D005044 ORTHO05D006799 4.3e-81 305.4 282 69.9
Ciclev10019527m.g Citrus clementina HOM05D005044 ORTHO05D006799 4.0e-79 298.9 279 71.0
RcHm_v2.0_Chr6g0289651 Rosa chinensis HOM05D005044 ORTHO05D006799 1.2e-78 297.4 230 79.1
Manes.01G202300 Manihot esculenta HOM05D005044 ORTHO05D006799 3.4e-78 295.8 282 75.5
FvH4_2g22590 Fragaria vesca HOM05D005044 ORTHO05D006799 9.9e-78 294.3 233 77.7
FAN24G0661 Fragaria x ananassa HOM05D005044 ORTHO05D006799 9.9e-78 294.3 233 77.7
FAN15G1010 Fragaria x ananassa HOM05D005044 ORTHO05D006799 1.3e-77 293.9 231 77.9
FAN20G1248 Fragaria x ananassa HOM05D005044 ORTHO05D006799 1.3e-77 293.9 232 78.0
Phvul.001G156000 Phaseolus vulgaris HOM05D005044 ORTHO05D006799 2.9e-77 292.7 228 77.2
FAN27G2477 Fragaria x ananassa HOM05D005044 ORTHO05D006799 3.7e-77 292.4 231 77.5
VMungo1383G1961 Vigna mungo HOM05D005044 ORTHO05D006799 1.1e-76 290.8 230 74.8
Manes.05G083800 Manihot esculenta HOM05D005044 ORTHO05D006799 1.4e-76 290.4 281 76.9
THA.LOC104804692 Tarenaya hassleriana HOM05D005044 ORTHO05D006799 1.9e-76 290.0 286 69.2
TWI75G1122 Tripterygium wilfordii HOM05D005044 ORTHO05D006799 3.2e-76 289.3 289 78.5
Duzib133G0403 Durio zibethinus HOM05D005044 ORTHO05D006799 6.0e-75 285.0 278 72.7
Glyma.03G158300 Glycine max HOM05D005044 ORTHO05D006799 7.8e-75 284.6 231 76.2
Glyma.19G160700 Glycine max HOM05D005044 ORTHO05D006799 7.8e-75 284.6 229 76.4
AT3G54610 Arabidopsis thaliana HOM05D005044 ORTHO05D006799 5.1e-74 282.0 237 72.6
Sp5g07850 Schrenkiella parvula HOM05D005044 ORTHO05D006799 5.1e-74 282.0 237 67.1
Lj1g0021498 Lotus japonicus HOM05D005044 ORTHO05D006799 6.6e-74 281.6 231 68.0
Haze_24523 Corylus avellana HOM05D005044 ORTHO05D006799 8.6e-74 281.2 280 66.1
CARHR164510 Cardamine hirsuta HOM05D005044 ORTHO05D006799 1.1e-73 280.8 236 74.6
Medtr7g096040 Medicago truncatula HOM05D005044 ORTHO05D006799 2.5e-73 279.6 229 76.0
AL5G35690 Arabidopsis lyrata HOM05D005044 ORTHO05D006799 4.3e-73 278.9 237 71.7
Eucgr.K03317 Eucalyptus grandis HOM05D005044 ORTHO05D006799 5.6e-73 278.5 231 74.5
Thhalv10010247m.g Eutrema salsugineum HOM05D005044 ORTHO05D006799 5.6e-73 278.5 237 67.9
Psat3g061080 Pisum sativum HOM05D005044 ORTHO05D006799 1.6e-72 276.9 229 75.1
CSS0043243 Camellia sinensis var. sinensis HOM05D005044 ORTHO05D006799 3.6e-72 275.8 275 72.7
Carub.0005s2121 Capsella rubella HOM05D005044 ORTHO05D006799 6.2e-72 275.0 237 72.2
Aa31sc64G50 Aethionema arabicum HOM05D005044 ORTHO05D006799 8.1e-72 274.6 235 66.0
TPR.G19106 Trifolium pratense HOM05D005044 ORTHO05D006799 1.8e-71 273.5 228 68.4
Lsat_1_v5_gn_9_8160 Lactuca sativa HOM05D005044 ORTHO05D006799 8.9e-71 271.2 278 68.3
Lj1A57T46 Lonicera japonica HOM05D005044 ORTHO05D006799 2.0e-70 270.0 233 72.5
TAR365G0173 Trochodendron aralioides HOM05D005044 ORTHO05D006799 2.6e-70 269.6 279 68.5
HanXRQChr10g0281481 Helianthus annuus HOM05D005044 ORTHO05D006799 4.4e-70 268.9 278 68.0
Dinv34561 Davidia involucrata HOM05D005044 ORTHO05D006799 9.9e-70 267.7 230 74.3
Nitab4.5_0004093g0010 Nicotiana tabacum HOM05D005044 ORTHO05D006799 9.9e-70 267.7 274 68.2
PGR044G0510 Punica granatum HOM05D005044 ORTHO05D006799 9.9e-70 267.7 284 68.7
Solyc10g045390.2 Solanum lycopersicum HOM05D005044 ORTHO05D006799 4.9e-69 265.4 229 69.0
Nitab4.5_0000393g0110 Nicotiana tabacum HOM05D005044 ORTHO05D006799 8.4e-69 264.6 229 69.4
MSTRG.17471 Avicennia marina HOM05D005044 ORTHO05D006799 1.4e-68 263.8 278 66.5
Gohir.D11G132200 Gossypium hirsutum HOM05D005044 ORTHO05D006799 1.4e-68 263.8 275 69.5
Gohir.A11G127000 Gossypium hirsutum HOM05D005044 ORTHO05D006799 1.9e-68 263.5 275 69.5
Sopen10g015430 Solanum pennellii HOM05D005044 ORTHO05D006799 2.4e-68 263.1 229 68.1
MELO3C007015.2 Cucumis melo HOM05D005044 ORTHO05D006799 3.2e-68 262.7 287 69.7
CsaV3_6G052930 Cucumis sativus L. HOM05D005044 ORTHO05D006799 3.2e-68 262.7 287 69.7
Eucgr.K03316 Eucalyptus grandis HOM05D005044 ORTHO05D006799 3.2e-68 262.7 232 72.8
Gorai.007G141400 Gossypium raimondii HOM05D005044 ORTHO05D006799 3.2e-68 262.7 275 69.5
Migut.N02179 Erythranthe guttata HOM05D005044 ORTHO05D006799 4.2e-68 262.3 233 67.8
Sc05g0001060 Simmondsia chinensis HOM05D005044 ORTHO05D006799 1.2e-67 260.8 231 68.8
Cfa002318 Carpinus fangiana HOM05D005044 ORTHO05D006799 1.6e-67 260.4 279 62.4
Lalb_Chr25g0290121 Lupinus albus HOM05D005044 ORTHO05D006799 2.1e-67 260.0 235 63.8
Dinv22487 Davidia involucrata HOM05D005044 ORTHO05D006799 4.6e-67 258.8 273 68.9
Nn1g02531 Nelumbo nucifera HOM05D005044 ORTHO05D006799 1.0e-66 257.7 236 67.8
Ca_08641_v3 Cicer arietinum L. HOM05D005044 ORTHO05D006799 1.3e-66 257.3 229 71.2
Thecc.01G268500 Theobroma cacao HOM05D005044 ORTHO05D006799 3.3e-65 252.7 278 67.3
SGA_v2.0_scaffold80G25918 Striga asiatica HOM05D005044 ORTHO05D006799 4.3e-65 252.3 229 68.6
Aqoxy2G03504 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 7.3e-65 251.5 239 66.5
CiPaw.04G181200 Carya illinoinensis HOM05D005044 ORTHO05D006799 7.3e-65 251.5 171 78.9
COL.COLO4_06089 Corchorus olitorius HOM05D005044 ORTHO05D006799 2.8e-64 249.6 237 68.8
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.6e-64 249.2 225 65.8
ClCG01G025700 Citrullus lanatus HOM05D005044 ORTHO05D006799 4.8e-64 248.8 317 62.1
MBI04_g08415_MAGBIO Magnolia biondii HOM05D005044 ORTHO05D006799 4.8e-64 248.8 242 64.0
Sed0025057 Sechium edule HOM05D005044 ORTHO05D006799 6.2e-64 248.4 281 67.3
unitig_22.g5955 Utricularia gibba HOM05D005044 ORTHO05D006799 9.0e-63 244.6 231 61.9
Rhsim01G0270400 Rhododendron simsii HOM05D005044 ORTHO05D006799 1.4e-60 237.3 219 68.9
DCAR_018443 Daucus carota HOM05D005044 ORTHO05D006799 3.5e-59 232.6 230 61.3
Peaxi162Scf01826g00015 Petunia axillaris HOM05D005044 ORTHO05D006799 4.6e-59 232.3 233 65.7
vmacro14879 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 3.9e-58 229.2 173 74.0
CDE07G1918 Ceratophyllum demersum HOM05D005044 ORTHO05D006799 4.3e-57 225.7 230 57.4
SHI09971 Sapria himalayana HOM05D005044 ORTHO05D006799 1.4e-55 220.7 206 64.1
PSO832G0444 Papaver somniferum HOM05D005044 ORTHO05D006799 1.5e-54 217.2 235 63.8
Hund09563 Selenicereus undatus HOM05D005044 ORTHO05D006799 2.0e-54 216.9 243 64.6
HPP92_024856 Vanilla planifolia HOM05D005044 ORTHO05D006799 7.6e-54 214.9 235 61.3
PSO210G5903 Papaver somniferum HOM05D005044 ORTHO05D006799 9.9e-54 214.5 236 61.0
BcaB01g00175 Brassica carinata HOM05D005044 ORTHO05D006799 4.2e-52 209.1 171 67.3
Lalb_Chr01g0019911 Lupinus albus HOM05D005044 ORTHO05D006799 4.2e-52 209.1 220 56.4
BcaC02g09057 Brassica carinata HOM05D005044 ORTHO05D006799 2.7e-51 206.5 239 56.1
ECA247G2181 Erigeron canadensis HOM05D005044 ORTHO05D006799 1.8e-50 203.8 278 60.8
vmacro02624 Vaccinium macrocarpon HOM05D005044 ORTHO05D006799 5.1e-50 202.2 172 68.6
A04p05210 Brassica napus HOM05D005044 ORTHO05D006799 3.3e-49 199.5 240 54.2
EL10Ac5g10465 Beta vulgaris HOM05D005044 ORTHO05D006799 4.3e-49 199.1 173 61.8
BcaC02g09052 Brassica carinata HOM05D005044 ORTHO05D006799 5.6e-49 198.7 243 54.3
BraA04t16230Z Brassica rapa HOM05D005044 ORTHO05D006799 5.6e-49 198.7 240 54.2
BcaB02g08448 Brassica carinata HOM05D005044 ORTHO05D006799 7.4e-49 198.4 241 53.9
AUR62032265 Chenopodium quinoa HOM05D005044 ORTHO05D006799 1.3e-48 197.6 134 76.9
PSO210G1356 Papaver somniferum HOM05D005044 ORTHO05D006799 2.8e-48 196.4 240 58.8
AUR62011952 Chenopodium quinoa HOM05D005044 ORTHO05D006799 4.8e-48 195.7 134 76.1
Rhsim13G0030500 Rhododendron simsii HOM05D005044 ORTHO05D006799 8.1e-48 194.9 273 49.8
C04p37870 Brassica napus HOM05D005044 ORTHO05D006799 1.1e-47 194.5 243 53.5
BolC4t25370H Brassica oleracea HOM05D005044 ORTHO05D006799 1.1e-47 194.5 213 57.3
C04p37940 Brassica napus HOM05D005044 ORTHO05D006799 4.0e-47 192.6 213 58.2
BolC4t25361H Brassica oleracea HOM05D005044 ORTHO05D006799 1.2e-46 191.0 243 52.3
PSO461G0059 Papaver somniferum HOM05D005044 ORTHO05D006799 1.5e-46 190.7 240 59.2
BraA04t16227Z Brassica rapa HOM05D005044 ORTHO05D006799 2.6e-46 189.9 242 53.7
A04p05170 Brassica napus HOM05D005044 ORTHO05D006799 7.6e-46 188.3 242 54.1
ATR0665G603 Amborella trichopoda HOM05D005044 ORTHO05D006799 1.7e-45 187.2 226 59.3
Os10g0415900 Oryza sativa ssp. japonica HOM05D005044 ORTHO05D006799 4.2e-44 182.6 99 83.8
Cc01_g18890 Coffea canephora HOM05D005044 ORTHO05D006799 9.3e-44 181.4 127 74.0
SMO367G0544 Selaginella moellendorffii HOM05D005044 ORTHO05D006799 4.8e-40 169.1 103 72.8
Aqoxy5G00364 Aquilegia oxysepala HOM05D005044 ORTHO05D006799 6.3e-40 168.7 216 53.2
Pp3c2_9560 Physcomitrium patens HOM05D005044 ORTHO05D006799 1.4e-39 167.5 170 54.7
GSVIVG01000712001 Vitis vinifera HOM05D005044 ORTHO05D006799 1.5e-38 164.1 89 84.3
Medtr8g062330 Medicago truncatula HOM05D005044 ORTHO05D006799 1.0e-37 161.4 123 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1037 Anthoceros agrestis HOM05D005044 ORTHO05D006799 1.7e-37 160.6 90 81.1
SEGI_32822 Sequoiadendron giganteum HOM05D005044 ORTHO05D006799 2.5e-36 156.8 101 73.3
Mapoly0187s0003 Marchantia polymorpha HOM05D005044 ORTHO05D006799 6.7e-34 148.7 140 57.1
CBR_g46433 Chara braunii HOM05D005044 ORTHO05D006799 2.2e-32 143.7 214 42.5
BolC9t54871H Brassica oleracea HOM05D005044 ORTHO05D006799 1.7e-29 134.0 239 44.4
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 4.2e-28 129.4 72 83.3
BcaC04g22409 Brassica carinata HOM05D005044 ORTHO05D000065 2.1e-27 127.1 239 43.1
C09p19690 Brassica napus HOM05D005044 ORTHO05D006799 1.8e-26 124.0 236 42.8
GSVIVG01000713001 Vitis vinifera HOM05D005044 ORTHO05D006799 2.0e-25 120.6 73 71.2
MCO07G152 Micromonas commoda HOM05D005044 ORTHO05D006799 1.0e-21 108.2 151 41.7
Zm00001eb223040 Zea mays HOM05D005044 ORTHO05D006799 5.5e-20 102.4 52 86.5
FAN24G2420 Fragaria x ananassa HOM05D005044 ORTHO05D020615 4.7e-19 99.4 96 58.3
FAN07G0333 Fragaria x ananassa HOM05D005044 ORTHO05D020615 2.3e-18 97.1 95 57.9
Cre06.g256200 Chlamydomonas reinhardtii HOM05D005044 ORTHO05D006799 8.8e-18 95.1 85 52.9
BcaC03g14692 Brassica carinata HOM05D000313 ORTHO05D000065 8.2e-16 88.6 206 39.3
PRCOL_00003272 Prasinoderma coloniale HOM05D005044 ORTHO05D006799 5.0e-13 79.3 84 47.6
Cfa021827 Carpinus fangiana HOM05D005044 ORTHO05D006799 2.5e-12 77.0 73 49.3
Lsat_1_v5_gn_2_63120 Lactuca sativa HOM05D005044 ORTHO05D006799 7.2e-12 75.5 48 72.9
Ah.11g050050 Amaranthus hybridus HOM05D005044 ORTHO05D060978 6.7e-10 68.9 100 49.0
QL05p088342 Quercus lobata HOM05D000009 ORTHO05D000008 2.6e-09 67.0 65 63.1
Haze_26753 Corylus avellana HOM05D005044 ORTHO05D006799 4.4e-09 66.2 84 35.7


User provided reference genes

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