Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 3.8e-312 1074.7 549 100.0
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.0e-158 564.3 542 54.1
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 5.3e-107 392.5 232 84.9
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.8e-92 343.6 226 72.6
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 3.1e-91 340.1 226 73.0
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.2e-90 338.2 226 71.7
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 2.0e-90 337.4 226 72.1
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.3e-89 334.7 224 72.8
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.7e-89 334.3 227 69.6
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 6.5e-89 332.4 224 73.2
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 6.5e-89 332.4 223 70.0
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 8.5e-89 332.0 224 70.5
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 8.5e-89 332.0 225 71.1
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.1e-88 331.6 226 69.0
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.1e-88 331.6 224 72.8
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.9e-88 330.9 224 72.8
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.9e-88 330.9 224 72.8
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.9e-88 330.9 232 71.1
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 2.5e-88 330.5 224 71.0
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 9.4e-88 328.6 232 70.7
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.2e-87 328.2 221 71.5
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.2e-87 328.2 227 71.8
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.6e-87 327.8 225 72.9
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.6e-87 327.8 224 71.9
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 2.7e-87 327.0 223 71.7
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.8e-86 324.3 228 70.2
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 5.2e-86 322.8 220 70.5
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 6.8e-86 322.4 225 69.3
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 8.8e-86 322.0 217 69.6
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 8.8e-86 322.0 224 68.8
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.2e-85 321.6 220 72.7
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 1.5e-85 321.2 224 67.9
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.5e-85 321.2 225 69.8
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 2.0e-85 320.9 226 69.0
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 2.0e-85 320.9 221 70.1
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 2.6e-85 320.5 224 67.9
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 4.4e-85 319.7 221 71.0
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.7e-85 319.3 225 68.9
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.7e-84 317.8 224 69.6
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.2e-84 317.4 224 68.3
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 2.2e-84 317.4 227 68.3
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.2e-84 317.4 226 69.0
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.8e-84 317.0 228 67.1
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 3.7e-84 316.6 220 67.3
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 4.8e-84 316.2 230 67.8
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 6.3e-84 315.8 219 69.9
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 8.3e-84 315.5 228 67.5
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 8.3e-84 315.5 217 67.7
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 8.3e-84 315.5 217 68.7
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.1e-83 315.1 224 66.5
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 1.4e-83 314.7 225 68.4
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.8e-83 314.3 223 70.0
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.1e-83 313.5 220 68.6
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 3.1e-83 313.5 226 69.0
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 3.1e-83 313.5 225 68.4
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 7.0e-83 312.4 219 70.3
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 7.0e-83 312.4 219 70.3
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 9.1e-83 312.0 224 63.8
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 9.1e-83 312.0 226 67.3
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.6e-82 311.2 226 66.4
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.6e-82 311.2 223 69.1
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.0e-82 310.8 224 67.9
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 3.5e-82 310.1 223 66.4
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 4.5e-82 309.7 223 66.4
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 5.9e-82 309.3 219 68.9
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 7.7e-82 308.9 223 65.9
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.0e-81 308.5 225 65.3
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.7e-81 307.8 221 68.3
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.9e-81 307.0 226 67.7
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 6.5e-81 305.8 224 66.1
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.2e-80 303.1 227 65.6
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 9.4e-80 302.0 227 65.6
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 2.7e-79 300.4 228 64.5
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 3.6e-79 300.1 203 69.5
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 4.7e-79 299.7 254 61.4
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 6.1e-79 299.3 221 65.6
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.8e-78 297.7 226 65.5
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 8.8e-78 295.4 226 63.7
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 3.4e-77 293.5 202 72.8
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 4.4e-77 293.1 226 63.3
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.4e-77 293.1 225 60.9
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 9.8e-77 292.0 282 53.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.2e-76 290.8 219 63.5
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.8e-76 290.4 226 63.3
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 8.3e-76 288.9 219 63.0
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.1e-75 288.5 225 59.6
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.4e-75 288.1 217 68.7
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.8e-75 287.7 221 62.9
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 4.1e-75 286.6 224 61.6
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 4.1e-75 286.6 224 61.6
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 7.0e-75 285.8 254 58.3
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.2e-74 285.0 222 60.4
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.6e-74 284.6 224 61.6
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 2.7e-74 283.9 226 60.2
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 3.5e-74 283.5 224 60.7
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 3.5e-74 283.5 224 60.7
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.0e-73 282.0 224 61.2
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.3e-73 280.8 218 62.4
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 2.9e-73 280.4 228 63.6
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.8e-73 280.0 185 74.1
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 6.6e-73 279.3 212 64.2
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 8.6e-73 278.9 226 59.3
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 8.6e-73 278.9 226 59.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 1.1e-72 278.5 214 63.1
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.9e-72 277.7 252 56.0
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.5e-72 277.3 226 58.8
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-72 277.3 226 58.8
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.5e-72 277.3 226 58.8
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.2e-72 275.8 218 61.5
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 7.2e-72 275.8 196 68.4
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.2e-71 275.0 216 64.8
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.2e-71 275.0 216 64.8
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.6e-71 274.6 219 62.6
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 5.2e-70 269.6 192 64.6
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.9e-70 268.9 226 61.1
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.2e-69 268.5 224 58.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.6e-69 267.3 223 61.4
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 3.4e-69 266.9 224 62.1
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 7.5e-69 265.8 230 55.7
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 9.8e-69 265.4 224 57.1
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.2e-66 258.5 192 66.7
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 2.0e-66 257.7 199 59.8
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 2.7e-66 257.3 188 67.6
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 2.8e-63 247.3 229 54.6
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 2.8e-63 247.3 229 54.6
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.8e-62 244.6 194 57.7
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 5.2e-62 243.0 204 55.9
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.7e-60 236.9 223 53.4
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.4e-59 234.2 157 72.0
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 2.0e-58 231.1 151 70.9
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.0e-58 231.1 200 56.0
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 2.7e-58 230.7 160 66.2
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 4.6e-58 229.9 238 55.5
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 3.0e-57 227.3 155 67.1
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 2.8e-55 220.7 173 62.4
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 2.6e-53 214.2 217 48.8
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 2.6e-53 214.2 181 61.3
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.3e-52 209.1 226 48.2
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 9.2e-51 205.7 224 52.2
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.0e-49 202.2 200 50.5
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 9.5e-48 195.7 154 60.4
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 3.6e-47 193.7 213 43.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.7e-47 193.4 216 44.9
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.6e-39 168.3 120 64.2
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 1.8e-38 164.9 120 63.3
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 8.9e-38 162.5 189 46.0
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.5e-37 161.8 116 65.5
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.3e-32 143.7 123 58.5
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 9.9e-29 132.5 90 70.0
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-28 132.1 86 72.1
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.1e-27 129.0 147 42.2
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 3.0e-25 120.9 209 34.0
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 9.9e-21 105.9 73 65.8
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.9e-21 105.9 154 42.2
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.9e-21 105.9 154 42.2
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.3e-17 95.5 80 61.2
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 8.7e-17 92.8 76 57.9
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.9e-16 91.7 66 66.7
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.5e-13 82.0 71 59.2
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.2e-11 73.9 46 71.7
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 2.4e-06 58.2 37 67.6
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 5.3e-06 57.0 59 47.5


User provided reference genes

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