Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 0.0e+00 1111.7 593 100.0
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.5e-221 771.5 543 79.0
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 6.4e-215 751.1 543 76.6
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 3.0e-156 556.2 552 60.9
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 2.2e-151 540.0 547 60.0
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.6e-149 533.9 548 60.6
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 5.7e-147 525.4 551 60.1
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.9e-143 513.1 553 59.5
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 7.2e-142 508.4 551 55.2
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.2e-141 507.7 565 55.4
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.6e-141 507.3 552 58.2
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.0e-140 504.6 560 53.8
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.0e-140 504.6 548 54.9
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.3e-140 503.4 546 54.2
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.1e-139 501.1 554 52.0
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.5e-139 500.7 544 54.0
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 2.0e-139 500.4 550 58.7
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.8e-138 496.5 549 53.6
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.1e-137 494.6 554 58.1
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.4e-137 494.2 564 55.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.5e-136 490.7 545 55.6
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.5e-136 489.2 549 53.6
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.0e-135 488.0 550 55.6
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 2.1e-133 480.3 549 54.5
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.0e-132 478.0 551 55.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.6e-131 473.4 559 50.4
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.3e-131 473.0 553 52.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 5.7e-131 472.2 551 53.9
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 9.7e-131 471.5 549 51.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.2e-130 470.3 555 55.7
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 4.8e-130 469.2 549 50.8
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 6.3e-130 468.8 549 50.8
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 7.0e-129 465.3 602 51.7
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 7.0e-129 465.3 563 54.7
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 7.7e-128 461.8 556 53.8
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.0e-127 461.5 543 52.7
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.2e-127 460.3 556 53.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.9e-127 459.9 562 53.0
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.9e-127 459.9 563 52.4
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.8e-127 459.5 549 51.2
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 3.8e-127 459.5 552 51.3
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.9e-126 457.2 564 52.8
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 9.4e-126 454.9 500 56.0
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.1e-125 453.8 553 53.7
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.7e-125 453.4 561 53.3
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 3.0e-124 449.9 634 49.5
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.2e-124 449.1 546 49.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.2e-123 448.0 552 52.4
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.0e-123 447.2 553 53.3
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 4.4e-123 446.0 555 53.7
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.4e-121 441.0 538 53.7
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.2e-120 438.0 552 52.5
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.1e-117 427.2 559 51.5
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 3.6e-117 426.4 557 51.7
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.3e-116 423.7 566 51.8
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 4.0e-116 422.9 568 50.5
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.2e-115 421.4 557 49.0
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.2e-115 421.4 548 48.2
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.3e-114 417.9 594 44.9
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 6.3e-114 415.6 554 47.3
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.1e-113 414.8 545 50.5
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.8e-113 414.1 567 51.7
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 7.0e-113 412.1 557 48.5
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 9.1e-113 411.8 561 50.6
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.0e-112 410.6 546 50.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 6.6e-111 405.6 554 48.9
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.3e-110 403.3 549 51.2
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 5.5e-110 402.5 550 47.1
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.6e-109 401.0 554 48.2
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.8e-109 400.2 547 51.7
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.8e-109 400.2 549 51.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 6.1e-109 399.1 494 51.0
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.0e-108 398.3 483 51.8
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 6.8e-108 395.6 568 47.5
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 6.8e-108 395.6 562 50.0
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 8.9e-108 395.2 569 47.8
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 3.4e-107 393.3 548 49.8
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 5.7e-107 392.5 543 45.1
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 7.5e-107 392.1 548 49.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 3.7e-106 389.8 545 51.7
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 6.3e-106 389.0 544 44.9
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.3e-106 389.0 547 48.1
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 6.3e-106 389.0 557 49.7
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.3e-106 388.7 562 49.5
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-105 388.3 547 49.0
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 3.1e-105 386.7 559 45.8
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 4.1e-105 386.3 559 45.8
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.7e-104 383.6 542 48.7
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.7e-104 383.6 554 48.2
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.5e-104 382.9 545 49.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.3e-103 381.3 486 50.6
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 2.3e-103 380.6 546 47.3
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.1e-102 378.3 493 49.5
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.9e-102 377.5 528 47.0
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.6e-101 374.4 546 44.9
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 6.8e-100 369.0 549 48.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 2.0e-99 367.5 549 49.5
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.6e-99 367.1 568 42.8
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 7.5e-99 365.5 551 44.1
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.9e-98 363.6 543 49.0
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 8.3e-98 362.1 556 43.2
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 2.4e-97 360.5 546 49.5
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 4.1e-97 359.8 548 45.1
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 9.2e-97 358.6 652 38.5
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.2e-96 358.2 549 48.3
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 6.0e-96 355.9 546 49.1
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.0e-95 355.1 437 50.6
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 3.6e-93 346.7 553 47.7
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 3.6e-93 346.7 553 47.7
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.7e-90 337.8 566 45.2
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 7.3e-78 295.8 378 48.7
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 2.2e-74 284.3 307 55.7
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.8e-74 283.5 582 37.3
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.0e-71 275.4 535 41.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.0e-71 275.4 533 42.8
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 7.3e-70 269.2 320 52.2
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 6.9e-68 262.7 304 53.9
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.9e-66 257.3 548 40.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.9e-66 257.3 548 40.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 7.1e-65 252.7 403 44.9
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 7.3e-62 242.7 250 64.0
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.6e-61 241.5 404 45.8
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 8.7e-55 219.2 131 87.8
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 9.0e-52 209.1 581 34.3
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.5e-48 197.2 597 31.0
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.3e-44 183.3 416 34.9
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.2e-43 182.2 528 32.8
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.2e-42 177.9 294 40.5
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.2e-41 173.7 188 53.2
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 5.5e-41 173.3 308 41.6
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-38 165.6 262 47.3
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.3e-38 163.7 167 56.9
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.6e-35 154.5 216 49.5
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.0e-34 152.5 642 27.3
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.5e-30 137.9 463 31.3
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.1e-28 131.0 107 63.6
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 4.4e-22 110.5 487 25.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.5e-19 100.5 99 56.6
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-18 98.6 87 58.6
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 8.5e-18 96.3 241 34.0
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.1e-17 95.9 127 48.8
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 8.0e-16 89.7 103 52.4
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.5e-14 85.5 177 34.5
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.7e-14 83.6 138 44.2
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.3e-13 82.4 432 28.2
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.3e-10 72.4 197 36.0
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.8e-10 70.9 78 52.6
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 5.0e-10 70.5 378 28.3
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.1e-09 69.3 262 28.2


User provided reference genes

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