Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 2.1e-241 838.6 412 100.0
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 2.3e-203 712.2 412 85.9
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 1.9e-186 656.0 412 78.9
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 1.8e-184 649.4 412 78.9
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 6.3e-161 571.2 412 69.4
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 2.6e-159 565.8 414 67.6
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 1.0e-158 563.9 414 66.9
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 2.9e-158 562.4 413 67.8
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 5.0e-158 561.6 410 67.1
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 1.1e-157 560.5 413 67.6
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 1.6e-156 556.6 413 65.9
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 3.6e-156 555.4 413 67.1
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 1.4e-152 543.5 408 65.4
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.5e-151 540.0 411 63.7
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 5.9e-151 538.1 408 64.0
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 1.4e-147 526.9 407 63.6
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 4.4e-146 521.9 412 60.9
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 7.4e-146 521.2 427 60.7
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.2e-145 519.6 410 61.5
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.2e-145 519.6 410 61.5
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 2.2e-145 519.6 408 61.5
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 2.8e-145 519.2 410 61.7
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 3.1e-144 515.8 411 59.9
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 1.0e-142 510.8 408 60.3
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 2.5e-141 506.1 409 60.6
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 1.2e-140 503.8 413 60.5
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 1.2e-140 503.8 403 61.8
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 1.6e-140 503.4 413 60.5
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 2.7e-140 502.7 412 59.5
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 2.7e-140 502.7 407 60.2
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 4.7e-140 501.9 410 60.7
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 3.0e-139 499.2 412 59.7
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 6.7e-139 498.0 413 57.6
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 8.8e-139 497.7 407 60.4
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 1.1e-138 497.3 411 58.4
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 1.5e-138 496.9 389 61.7
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 4.4e-138 495.4 411 58.9
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.7e-137 493.4 407 59.7
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 2.8e-137 492.7 409 57.0
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 2.8e-137 492.7 411 57.9
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 4.8e-137 491.9 411 58.4
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 1.1e-136 490.7 407 60.2
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 1.8e-136 490.0 411 57.7
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 3.1e-136 489.2 408 60.3
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 3.1e-136 489.2 414 56.5
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 1.6e-135 486.9 411 60.1
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 5.9e-135 485.0 407 60.0
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 5.9e-135 485.0 407 59.5
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.7e-134 483.4 407 58.2
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 2.9e-134 482.6 413 57.6
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 2.9e-134 482.6 407 59.5
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 5.0e-134 481.9 416 56.7
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 5.0e-134 481.9 406 58.4
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 6.5e-134 481.5 406 58.6
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 8.5e-134 481.1 415 56.4
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 8.5e-134 481.1 413 57.6
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 2.5e-133 479.6 413 57.1
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 2.1e-132 476.5 413 57.9
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 2.7e-132 476.1 410 59.0
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 2.7e-132 476.1 409 59.7
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 4.7e-132 475.3 406 57.9
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 8.0e-132 474.6 420 54.8
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 4.0e-131 472.2 413 56.4
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 5.2e-131 471.9 400 56.2
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 6.8e-131 471.5 400 58.0
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 1.2e-130 470.7 394 60.9
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 5.7e-130 468.4 415 59.3
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 9.8e-130 467.6 394 60.4
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 9.8e-130 467.6 414 56.3
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 9.8e-130 467.6 414 56.3
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 2.2e-129 466.5 385 60.0
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 1.8e-128 463.4 408 56.9
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 1.8e-128 463.4 406 55.2
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 3.1e-128 462.6 404 56.2
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 1.6e-127 460.3 406 54.9
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 2.7e-127 459.5 402 55.5
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 1.0e-126 457.6 382 57.9
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 2.2e-126 456.4 410 55.9
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 3.1e-120 436.0 411 53.3
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.6e-119 433.7 406 54.2
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 2.7e-119 433.0 406 54.2
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 5.0e-118 428.7 406 53.9
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 2.5e-117 426.4 336 62.8
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 1.0e-115 421.0 410 50.5
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 3.0e-115 419.5 407 52.6
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 4.4e-114 415.6 336 60.7
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 4.4e-114 415.6 403 50.9
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 9.8e-114 414.5 354 58.8
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 1.8e-112 410.2 320 65.0
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 2.4e-112 409.8 431 50.1
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 2.0e-111 406.8 408 50.7
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 1.7e-110 403.7 361 55.1
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 3.0e-110 402.9 411 50.6
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 1.5e-109 400.6 408 48.3
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 2.1e-108 396.7 413 49.9
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 4.7e-108 395.6 407 49.4
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 9.8e-106 387.9 392 51.5
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 5.4e-104 382.1 408 48.5
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 3.9e-102 375.9 312 61.5
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 1.1e-101 374.4 408 47.8
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 5.2e-99 365.5 338 55.0
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 2.2e-97 360.1 407 48.9
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 5.4e-96 355.5 291 61.9
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 2.7e-95 353.2 373 50.1
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 4.7e-92 342.4 429 46.2
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 1.4e-91 340.9 287 58.5
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 4.9e-89 332.4 341 52.2
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 8.1e-84 315.1 225 67.6
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 1.5e-82 310.8 412 40.5
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 1.9e-80 303.9 218 65.1
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 2.8e-76 290.0 415 41.0
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 7.6e-74 282.0 395 39.2
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 1.3e-73 281.2 411 37.5
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 1.4e-64 251.1 183 63.4
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 1.8e-59 234.2 227 54.6
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 1.1e-51 208.4 422 30.3
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 2.2e-44 184.1 150 58.7
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 3.7e-44 183.3 202 46.5
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 1.8e-30 137.9 120 55.0
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 7.0e-27 125.9 116 50.0
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 3.8e-25 120.2 232 35.8
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 3.8e-25 120.2 86 66.3
ClCG05G018230 Citrullus lanatus HOM05D006392 ORTHO05D008010 1.7e-12 78.2 47 70.2
Cre09.g401367 Chlamydomonas reinhardtii HOM05D006392 ORTHO05D008010 2.7e-10 70.9 138 31.2
Zm00001eb340150 Zea mays HOM05D006392 ORTHO05D008010 1.0e-06 58.9 109 35.8


User provided reference genes

Program Settings