Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1736.9 839 100.0
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1578.9 805 94.2
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1493.8 803 89.9
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1468.4 810 87.5
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1355.5 803 80.2
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1317.8 804 76.9
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1313.1 804 76.7
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1301.2 803 77.3
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1296.6 803 76.5
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1289.2 803 76.2
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1288.1 803 75.7
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1273.8 802 74.8
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1270.8 803 74.8
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1269.2 803 74.7
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1268.4 803 75.3
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1258.0 803 73.8
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1253.8 803 73.8
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1253.0 816 73.4
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1246.5 803 74.5
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1245.0 819 71.9
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1241.9 803 72.7
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1241.5 838 71.5
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1238.0 803 74.0
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1236.5 804 74.4
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1236.1 803 73.8
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1223.0 803 71.5
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1221.8 817 72.6
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1219.9 839 69.2
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1219.1 803 72.2
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1218.0 886 68.3
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1217.2 803 73.2
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1216.8 807 70.9
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1211.8 803 70.9
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1206.0 802 71.3
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1197.2 803 70.4
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1196.0 803 69.5
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1192.9 833 69.6
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1178.3 808 68.8
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1176.8 803 69.4
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1171.8 805 68.7
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1171.4 804 70.1
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1171.0 803 67.9
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1170.2 804 70.0
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1165.6 772 71.4
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1164.1 806 67.9
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1162.5 806 69.6
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1161.0 804 67.3
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1160.6 806 69.1
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1159.8 758 72.6
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1158.3 839 65.4
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1157.9 805 67.5
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1156.0 806 67.6
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1156.0 809 68.9
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1154.8 809 69.2
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1152.9 853 65.7
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1152.5 806 67.1
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1149.8 814 67.6
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1149.0 801 68.4
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1146.0 802 68.6
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1142.5 803 68.6
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 0.0e+00 1139.4 806 66.5
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 0.0e+00 1134.8 806 66.3
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1134.4 801 67.5
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1133.6 808 66.6
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1133.2 804 67.2
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1133.2 806 67.7
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1133.2 807 68.0
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1132.9 802 67.3
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1126.7 807 66.9
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1125.9 858 62.7
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1124.4 804 66.5
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1115.5 809 67.1
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1115.5 809 67.1
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1113.2 807 66.5
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 0.0e+00 1112.4 847 63.8
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 0.0e+00 1106.7 788 66.0
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 0.0e+00 1100.5 855 62.6
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 0.0e+00 1096.6 808 66.6
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1078.9 801 65.4
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 2.9e-311 1071.6 804 67.0
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 2.1e-304 1048.9 808 63.2
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.3e-303 1045.4 808 61.5
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 8.8e-303 1043.5 710 71.1
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 2.0e-302 1042.3 805 61.9
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 7.7e-299 1030.4 711 69.6
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 7.2e-297 1023.8 808 60.0
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 1.5e-286 989.6 731 65.7
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 2.1e-272 942.6 610 75.4
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 5.4e-260 901.4 611 70.9
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 2.5e-257 892.5 598 71.1
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 3.2e-252 875.5 804 54.7
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 2.5e-225 786.2 616 61.0
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 9.9e-222 774.2 609 62.9
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.9e-220 770.0 836 48.2
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 2.6e-206 723.0 832 47.0
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 5.0e-197 692.2 829 43.9
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.2e-179 634.4 533 58.9
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 6.7e-178 628.6 462 68.0
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 8.2e-176 621.7 459 66.2
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 3.7e-160 569.7 372 75.0
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 2.5e-148 530.4 582 46.4
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 1.7e-144 517.7 457 54.9
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 3.6e-139 500.0 446 55.4
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.1e-135 488.4 414 60.4
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.7e-133 481.1 468 51.3
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 1.0e-125 455.3 315 67.9
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 9.9e-113 412.1 340 65.3
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 2.1e-107 394.4 237 84.4
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 7.4e-92 342.8 193 77.7
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 7.1e-87 326.2 306 56.2
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 2.5e-79 301.2 149 91.3
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.9e-78 296.2 265 55.5
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 6.9e-74 283.1 146 84.9
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 7.2e-71 273.1 510 35.7
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 4.2e-55 220.7 123 74.0
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 1.6e-54 218.8 857 26.4
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 8.3e-51 206.5 195 46.7
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 2.4e-50 204.9 147 60.5
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.3e-43 182.6 193 50.8
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.7e-38 164.1 93 75.3
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 6.1e-30 137.1 82 72.0
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 8.0e-22 110.2 54 85.2
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.0e-21 107.8 197 36.0
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 3.0e-16 91.7 116 44.8
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 4.6e-09 67.8 52 57.7
A03p31920 Brassica napus HOM05D001597 ORTHO05D001512 1.5e-07 62.8 261 27.6
BcaC01g06849 Brassica carinata HOM05D001597 ORTHO05D001512 2.5e-07 62.0 261 26.8
BolC3t16166H Brassica oleracea HOM05D001597 ORTHO05D001512 2.5e-07 62.0 261 26.8
BraA03t12364Z Brassica rapa HOM05D001597 ORTHO05D001512 3.3e-07 61.6 233 27.9
C03p38940 Brassica napus HOM05D001597 ORTHO05D001512 4.3e-07 61.2 261 26.8
Sopen12g028640 Solanum pennellii HOM05D001597 ORTHO05D001512 4.3e-07 61.2 176 27.8
PGSC0003DMG400004985 Solanum tuberosum HOM05D001597 ORTHO05D001512 9.6e-07 60.1 167 29.9
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 1.6e-06 59.3 154 30.5
Solyc12g056130.2 Solanum lycopersicum HOM05D001597 ORTHO05D001512 2.8e-06 58.5 176 27.3
Ah.12g052180 Amaranthus hybridus HOM05D001597 ORTHO05D001512 6.2e-06 57.4 167 30.5
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 6.2e-06 57.4 164 33.5


User provided reference genes

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