Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 0.0e+00 1368.2 693 100.0
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 0.0e+00 1272.3 694 93.1
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1109.4 695 81.0
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1104.0 694 81.3
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1102.4 695 80.7
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1094.0 691 80.9
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1080.9 692 79.9
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1079.7 695 78.7
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1077.4 697 79.1
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1076.2 693 78.9
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1075.1 690 79.1
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 4.7e-312 1074.7 693 78.9
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.7e-312 1073.5 696 79.7
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 3.4e-308 1061.2 696 77.0
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 5.7e-308 1060.4 727 76.5
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 9.8e-308 1059.7 695 78.3
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 1.7e-307 1058.9 696 77.9
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 8.3e-307 1056.6 696 77.3
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 1.8e-306 1055.4 701 76.6
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 2.4e-306 1055.0 696 77.0
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 1.6e-305 1052.4 696 77.0
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 2.0e-305 1052.0 695 78.0
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 2.3e-304 1048.5 691 77.4
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 3.8e-304 1047.7 697 76.3
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 5.0e-304 1047.3 696 77.6
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 1.1e-303 1046.2 696 77.0
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.6e-302 1042.3 696 76.6
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 6.8e-301 1036.9 695 75.8
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.5e-300 1035.8 696 77.6
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 2.6e-300 1035.0 679 77.2
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 2.6e-300 1035.0 691 76.6
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 4.4e-300 1034.2 692 77.6
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 7.5e-300 1033.5 689 77.2
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 1.7e-299 1032.3 697 76.3
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 8.3e-299 1030.0 697 77.8
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 1.1e-298 1029.6 744 73.1
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 3.1e-298 1028.1 696 75.0
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 3.1e-298 1028.1 693 76.0
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 4.1e-298 1027.7 689 76.2
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 4.5e-297 1024.2 695 76.0
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 8.6e-296 1020.0 689 74.9
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 8.6e-296 1020.0 696 75.4
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 1.9e-295 1018.8 693 74.5
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 3.3e-295 1018.1 693 75.3
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 3.3e-295 1018.1 696 74.6
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 1.2e-294 1016.1 693 75.3
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 1.2e-294 1016.1 693 75.3
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.4e-293 1012.7 689 75.8
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 5.2e-293 1010.7 696 76.0
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 8.9e-293 1010.0 693 75.0
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 1.2e-292 1009.6 740 71.5
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 4.4e-292 1007.7 695 74.1
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 4.4e-292 1007.7 647 78.7
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.3e-291 1006.1 689 75.2
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.3e-291 1006.1 692 75.1
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 4.9e-291 1004.2 695 73.5
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.7e-289 998.4 726 70.8
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 3.0e-288 995.0 693 74.6
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 1.1e-287 993.0 691 73.8
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 8.0e-286 986.9 711 72.2
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.4e-285 986.1 696 72.7
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 8.9e-285 983.4 695 73.5
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 8.9e-285 983.4 696 73.0
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 9.2e-282 973.4 696 72.7
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.3e-280 969.5 693 72.6
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 8.1e-278 960.3 694 72.2
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 2.0e-276 955.7 695 71.7
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 3.4e-276 954.9 801 63.7
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 9.9e-276 953.4 696 71.3
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 8.3e-275 950.3 695 71.2
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.1e-274 949.9 694 70.7
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 3.2e-274 948.3 696 70.5
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.6e-273 946.0 695 70.1
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 5.1e-272 941.0 693 70.3
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 6.6e-272 940.6 693 70.9
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 2.5e-271 938.7 695 71.1
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.1e-269 933.3 695 70.4
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 3.1e-269 931.8 696 69.5
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 4.0e-269 931.4 696 69.5
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 1.2e-268 929.9 696 69.4
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 1.2e-268 929.9 696 69.4
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 7.8e-265 917.1 696 68.7
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.1e-263 913.3 1197 47.7
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 2.5e-263 912.1 695 68.1
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 1.1e-258 896.7 703 66.3
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.1e-250 870.2 555 79.8
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 6.9e-245 850.9 689 64.7
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.2e-244 850.1 687 64.9
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 3.4e-236 822.0 717 60.7
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 5.5e-234 814.7 773 59.5
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.2e-228 797.0 583 71.7
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.1e-225 786.2 724 56.9
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 2.8e-222 775.8 537 75.2
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 3.3e-215 752.3 497 76.7
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 3.0e-208 729.2 518 73.2
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.1e-207 727.2 469 78.3
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 4.0e-200 702.2 644 56.8
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 4.1e-197 692.2 717 54.0
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.3e-182 644.0 419 78.3
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 1.4e-136 491.1 710 42.4
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 3.1e-136 490.0 711 40.5
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 4.5e-127 459.5 706 39.1
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 9.3e-125 451.8 694 44.1
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 4.5e-119 433.0 275 80.7
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.2e-116 424.9 696 42.2
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 8.7e-115 418.7 661 43.1
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 1.1e-114 418.3 475 49.9
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 1.8e-112 411.0 270 78.1
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 5.3e-112 409.5 232 87.9
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.5e-93 348.2 425 51.5
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.6e-92 344.7 247 72.5
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 9.1e-88 328.9 679 35.2
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.5e-78 295.8 222 69.4
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 1.2e-66 258.8 280 54.3
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 3.7e-65 253.8 204 66.7
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 1.6e-52 211.8 167 63.5
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 1.6e-47 195.3 143 73.4
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 1.6e-47 195.3 143 73.4
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 1.7e-41 175.3 101 82.2
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 1.0e-38 166.0 125 72.0
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.4e-27 129.0 116 56.0
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 4.6e-23 114.0 215 39.5
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 4.6e-23 114.0 84 63.1
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 1.8e-19 102.1 73 71.2
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 2.6e-18 98.2 63 77.8
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 1.7e-09 68.9 149 34.2


User provided reference genes

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