Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0179700 Salix brachista HOM05D005907 ORTHO05D007033 4.3e-112 407.9 194 100.0
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 4.3e-27 125.6 104 66.3
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 3.4e-16 89.4 70 58.6
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 7.1e-14 81.6 70 55.7
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 2.1e-13 80.1 70 54.3
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 2.7e-13 79.7 79 49.4
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 3.5e-13 79.3 69 55.1
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 4.6e-13 79.0 72 55.6
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 8.7e-12 74.7 70 54.3
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 8.7e-12 74.7 69 52.2
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 2.5e-11 73.2 67 55.2
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 2.5e-11 73.2 72 50.0
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 4.3e-11 72.4 73 49.3
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 5.6e-11 72.0 71 50.7
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 7.3e-11 71.6 71 46.5
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 1.6e-10 70.5 67 50.7
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 3.6e-10 69.3 68 47.1
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 8.1e-10 68.2 110 37.3
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 8.1e-10 68.2 110 37.3
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 8.1e-10 68.2 67 52.2
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 8.1e-10 68.2 72 48.6
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.1e-09 67.8 110 36.4
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 1.1e-09 67.8 68 54.4
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 1.4e-09 67.4 71 49.3
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 1.4e-09 67.4 71 42.3
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 1.4e-09 67.4 71 49.3
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 1.8e-09 67.0 71 47.9
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 1.8e-09 67.0 68 50.0
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 2.4e-09 66.6 70 44.3
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 2.4e-09 66.6 78 42.3
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 2.4e-09 66.6 69 49.3
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 5.3e-09 65.5 70 48.6
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 6.9e-09 65.1 110 36.4
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 2.6e-08 63.2 71 45.1
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 4.5e-08 62.4 82 36.6
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 4.5e-08 62.4 71 49.3
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 4.5e-08 62.4 71 46.5
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 4.5e-08 62.4 66 47.0
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 5.8e-08 62.0 70 47.1
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 7.6e-08 61.6 70 45.7
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 7.6e-08 61.6 67 47.8
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 9.9e-08 61.2 70 44.3
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 9.9e-08 61.2 78 42.3
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 9.9e-08 61.2 74 45.9
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 1.3e-07 60.8 71 43.7
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.3e-07 60.8 68 47.1
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.3e-07 60.8 68 47.1
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.3e-07 60.8 69 46.4
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 1.7e-07 60.5 69 42.0
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 1.7e-07 60.5 70 48.6
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 2.2e-07 60.1 70 44.3
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 2.2e-07 60.1 67 44.8
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 2.9e-07 59.7 65 46.2
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 2.9e-07 59.7 69 43.5
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 3.8e-07 59.3 65 44.6
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 3.8e-07 59.3 65 40.0
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 4.9e-07 58.9 68 44.1
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 4.9e-07 58.9 68 44.1
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 4.9e-07 58.9 67 40.3
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 4.9e-07 58.9 69 43.5
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 4.9e-07 58.9 111 37.8
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 4.9e-07 58.9 84 39.3
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 6.4e-07 58.5 59 49.2
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 6.4e-07 58.5 69 43.5
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 6.4e-07 58.5 67 41.8
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 8.4e-07 58.2 65 44.6
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 8.4e-07 58.2 67 41.8
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 1.1e-06 57.8 69 43.5
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 1.1e-06 57.8 69 43.5
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 1.1e-06 57.8 69 42.0
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 1.1e-06 57.8 55 50.9
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 1.4e-06 57.4 69 39.1
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 1.9e-06 57.0 110 33.6
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 1.9e-06 57.0 69 40.6
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 2.4e-06 56.6 67 41.8
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 2.4e-06 56.6 67 44.8
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 2.4e-06 56.6 65 41.5
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 3.2e-06 56.2 65 41.5
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 3.2e-06 56.2 71 42.3
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 4.2e-06 55.8 70 42.9
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 4.2e-06 55.8 69 46.4
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 4.2e-06 55.8 70 44.3
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 5.4e-06 55.5 69 47.8
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 5.4e-06 55.5 73 42.5
Lsat_1_v5_gn_6_17141 Lactuca sativa HOM05D005907 ORTHO05D007033 7.1e-06 55.1 69 42.0
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 7.1e-06 55.1 67 37.3
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 7.1e-06 55.1 69 37.7
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 7.1e-06 55.1 71 39.4
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 7.1e-06 55.1 75 38.7
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 9.3e-06 54.7 56 46.4
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 9.3e-06 54.7 70 37.1
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 9.3e-06 54.7 71 39.4


User provided reference genes

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