Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 4.2e-223 777.7 390 100.0
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 6.0e-145 518.1 388 74.5
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 1.1e-106 391.0 394 60.4
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.6e-105 387.1 387 58.7
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 3.7e-102 375.9 374 57.2
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 8.1e-102 374.8 333 62.5
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 8.1e-102 374.8 374 57.5
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 2.4e-101 373.2 366 59.3
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 3.1e-101 372.9 372 56.7
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 6.9e-101 371.7 376 56.6
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 9.0e-101 371.3 364 59.1
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 1.2e-100 370.9 391 56.3
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.2e-100 370.9 382 56.0
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.5e-100 370.5 381 57.5
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 2.6e-100 369.8 356 60.7
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 5.8e-100 368.6 364 58.0
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 5.8e-100 368.6 351 59.0
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 5.8e-100 368.6 323 63.2
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 7.6e-100 368.2 381 58.5
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.0e-99 367.9 338 60.4
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 1.7e-99 367.1 375 58.4
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 1.7e-99 367.1 393 56.2
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.7e-99 367.1 318 64.2
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.7e-99 367.1 318 64.2
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 2.2e-99 366.7 323 62.5
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 2.2e-99 366.7 364 59.1
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 3.8e-99 365.9 318 63.8
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 4.9e-99 365.5 379 57.0
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 8.4e-99 364.8 298 65.8
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 1.9e-98 363.6 300 66.3
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 2.5e-98 363.2 339 60.2
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 4.2e-98 362.5 367 57.8
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 4.2e-98 362.5 311 65.3
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 7.1e-98 361.7 392 55.1
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 1.2e-97 360.9 336 61.0
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 2.1e-97 360.1 338 59.5
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 3.5e-97 359.4 367 56.4
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 4.6e-97 359.0 308 65.9
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 7.9e-97 358.2 300 65.0
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 2.3e-96 356.7 318 62.6
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 5.1e-96 355.5 363 58.1
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 5.1e-96 355.5 298 64.1
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 8.7e-96 354.8 353 56.9
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 1.1e-95 354.4 366 57.7
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 1.5e-95 354.0 300 63.3
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 1.5e-95 354.0 357 58.0
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 1.5e-95 354.0 309 63.1
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.9e-95 353.6 304 63.8
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 2.5e-95 353.2 353 55.8
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 7.4e-95 351.7 387 53.5
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 2.1e-94 350.1 359 56.0
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 2.1e-94 350.1 383 53.5
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 2.1e-94 350.1 317 60.9
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 2.1e-94 350.1 301 64.1
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 2.1e-94 350.1 300 64.0
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 4.8e-94 349.0 382 53.1
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 8.2e-94 348.2 385 53.0
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 8.2e-94 348.2 386 53.4
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 1.1e-93 347.8 321 59.8
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 1.4e-93 347.4 347 57.9
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 1.4e-93 347.4 368 56.0
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 4.1e-93 345.9 317 60.9
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 5.3e-93 345.5 384 53.4
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 5.3e-93 345.5 306 62.4
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 5.3e-93 345.5 321 60.4
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 9.0e-93 344.7 314 60.5
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 1.2e-92 344.4 308 60.7
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 2.6e-92 343.2 314 61.8
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 3.4e-92 342.8 371 54.7
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 3.4e-92 342.8 301 62.8
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 7.6e-92 341.7 293 64.2
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 1.0e-91 341.3 310 61.6
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.0e-91 341.3 321 57.9
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 1.7e-91 340.5 382 53.1
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.2e-91 340.1 315 58.7
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 3.8e-91 339.3 429 50.3
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 8.4e-91 338.2 266 68.4
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 3.2e-90 336.3 385 53.2
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 9.3e-90 334.7 368 54.6
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 9.3e-90 334.7 300 61.7
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 1.2e-89 334.3 383 54.3
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 2.7e-89 333.2 332 56.0
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 1.0e-88 331.3 323 57.9
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 2.3e-88 330.1 368 51.6
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 3.0e-88 329.7 278 65.5
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 1.1e-87 327.8 298 59.7
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 4.3e-87 325.9 310 58.4
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 9.7e-87 324.7 380 52.9
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 1.8e-85 320.5 276 64.5
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 2.6e-84 316.6 312 58.3
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 4.5e-84 315.8 276 62.7
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 2.2e-83 313.5 298 57.7
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 3.6e-81 306.2 312 56.7
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 7.9e-81 305.1 244 67.6
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 1.4e-80 304.3 311 55.9
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 1.4e-80 304.3 383 52.5
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 2.5e-79 300.1 372 49.7
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 4.3e-79 299.3 303 54.8
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.1e-77 294.7 294 55.4
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.8e-77 293.9 301 52.8
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 8.5e-75 285.0 271 57.9
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 8.5e-75 285.0 310 53.9
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 1.1e-74 284.6 319 53.0
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 1.2e-73 281.2 349 51.0
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 8.5e-67 258.5 320 51.2
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 2.6e-63 246.9 298 48.3
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.2e-62 243.8 244 56.1
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.0e-60 237.3 278 53.6
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 1.5e-58 231.1 221 56.6
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 7.2e-58 228.8 302 45.7
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 4.7e-57 226.1 263 49.8
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.5e-50 204.5 188 62.2
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 5.7e-47 192.6 236 44.9
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 9.8e-47 191.8 175 61.1
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.3e-43 180.6 179 55.9
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.3e-38 164.9 213 46.9
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 5.4e-37 159.5 115 73.0
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 4.0e-32 143.3 157 51.6
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 2.9e-30 137.1 271 38.7
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 3.3e-26 123.6 339 32.2
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 3.3e-26 123.6 212 41.0
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 5.8e-23 112.8 143 48.3
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 2.7e-20 104.0 115 56.5
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 1.0e-19 102.1 203 36.0
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 5.2e-16 89.7 84 56.0
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 1.5e-15 88.2 55 74.5
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 3.8e-14 83.6 48 83.3
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 9.2e-13 79.0 87 57.5
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 3.9e-11 73.6 115 40.0
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 5.6e-10 69.7 266 24.4
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 4.0e-08 63.5 61 60.7


User provided reference genes

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