Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 5.7e-50 200.7 106 100.0
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.2e-47 193.0 106 96.2
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.3e-30 135.6 103 76.7
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.0e-27 126.7 106 63.2
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 7.5e-26 120.6 96 67.7
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 9.8e-26 120.2 106 61.3
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.7e-25 118.2 106 61.3
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.9e-24 115.9 106 60.4
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.9e-24 115.9 106 60.4
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 2.4e-24 115.5 106 58.5
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 4.1e-24 114.8 106 58.5
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 5.4e-24 114.4 106 60.4
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 9.2e-24 113.6 81 72.8
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.6e-23 112.8 95 63.2
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 4.6e-23 111.3 106 57.5
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 6.0e-23 110.9 106 59.4
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 7.8e-23 110.5 106 60.4
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 2.3e-22 109.0 106 55.7
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 2.3e-22 109.0 107 57.9
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.3e-22 109.0 106 58.5
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 6.6e-22 107.5 106 58.5
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.6e-22 107.5 94 59.6
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 8.6e-22 107.1 106 55.7
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-21 106.7 99 56.6
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.1e-21 106.7 100 64.0
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.9e-21 105.9 94 59.6
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.5e-21 105.5 94 56.4
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 4.3e-21 104.8 106 54.7
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 5.6e-21 104.4 80 66.2
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 7.3e-21 104.0 106 52.8
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 9.5e-21 103.6 94 59.6
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 9.5e-21 103.6 102 55.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 9.5e-21 103.6 94 57.4
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.2e-20 103.2 94 58.5
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.6e-20 102.8 94 58.5
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.6e-20 102.8 107 57.9
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.1e-20 102.4 94 56.4
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.1e-20 102.4 106 52.8
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.8e-20 102.1 97 58.8
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 2.8e-20 102.1 106 56.6
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.8e-20 102.1 93 60.2
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.8e-20 102.1 93 60.2
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.7e-20 101.3 111 55.0
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 4.7e-20 101.3 95 58.9
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 8.1e-20 100.5 106 53.8
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 8.1e-20 100.5 107 55.1
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 8.1e-20 100.5 102 52.9
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.4e-19 99.8 100 57.0
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.4e-19 99.8 93 59.1
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.8e-19 99.4 107 55.1
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 4.0e-19 98.2 98 56.1
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 4.0e-19 98.2 98 56.1
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 4.0e-19 98.2 106 57.5
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.0e-19 98.2 94 56.4
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.0e-19 98.2 106 54.7
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 5.2e-19 97.8 87 60.9
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 6.8e-19 97.4 100 57.0
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 6.8e-19 97.4 81 65.4
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 6.8e-19 97.4 99 55.6
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 6.8e-19 97.4 95 55.8
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 8.9e-19 97.1 81 61.7
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.2e-18 96.7 99 55.6
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.5e-18 96.3 94 56.4
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 2.0e-18 95.9 100 51.0
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 2.6e-18 95.5 106 53.8
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 2.6e-18 95.5 95 56.8
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.6e-18 95.5 95 57.9
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 2.6e-18 95.5 83 61.4
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 5.8e-18 94.4 106 50.9
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 5.8e-18 94.4 100 53.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.5e-18 94.0 105 50.5
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 9.8e-18 93.6 106 53.8
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.3e-17 93.2 94 55.3
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.3e-17 93.2 93 53.8
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.3e-17 93.2 104 52.9
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.3e-17 93.2 95 56.8
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.7e-17 92.8 94 55.3
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.7e-17 92.8 94 54.3
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 2.2e-17 92.4 99 54.5
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 2.2e-17 92.4 99 54.5
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 2.2e-17 92.4 107 52.3
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.9e-17 92.0 104 52.9
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.9e-17 91.3 94 53.2
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 6.4e-17 90.9 98 52.0
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 8.3e-17 90.5 96 56.2
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.4e-16 89.7 80 57.5
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 1.9e-16 89.4 76 61.8
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 2.4e-16 89.0 93 50.5
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.2e-16 88.6 94 52.1
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 3.2e-16 88.6 95 56.8
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 4.1e-16 88.2 93 49.5
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 5.4e-16 87.8 56 80.4
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 7.1e-16 87.4 107 50.5
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 7.1e-16 87.4 91 58.2
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.2e-16 87.0 100 51.0
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.6e-15 86.3 88 54.5
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.1e-15 85.9 105 52.4
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.1e-15 85.9 106 51.9
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 2.7e-15 85.5 72 61.1
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.7e-15 85.5 91 50.5
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 2.7e-15 85.5 94 56.4
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 3.5e-15 85.1 95 53.7
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 4.6e-15 84.7 100 50.0
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.6e-15 84.7 98 54.1
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.6e-15 84.7 90 56.7
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 6.0e-15 84.3 97 54.6
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 7.8e-15 84.0 104 51.9
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.3e-14 83.2 97 51.5
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.3e-14 82.4 106 48.1
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.3e-14 82.4 99 54.5
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.0e-14 82.0 61 63.9
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.9e-14 81.6 82 54.9
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.1e-13 80.1 95 52.6
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 1.1e-13 80.1 96 50.0
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 1.1e-13 80.1 106 48.1
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.5e-13 79.7 98 46.9
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.9e-13 79.3 82 52.4
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.5e-13 79.0 94 51.1
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 3.3e-13 78.6 83 51.8
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 4.3e-13 78.2 94 51.1
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.6e-13 77.8 77 51.9
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 7.3e-13 77.4 80 55.0
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 9.5e-13 77.0 100 49.0
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 9.5e-13 77.0 93 51.6
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 9.5e-13 77.0 99 50.5
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 9.5e-13 77.0 93 49.5
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.2e-12 76.6 105 44.8
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.6e-12 76.3 74 54.1
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.6e-12 75.1 110 47.3
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 4.7e-12 74.7 72 58.3
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 4.7e-12 74.7 105 43.8
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 6.2e-12 74.3 95 51.6
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.2e-12 74.3 79 57.0
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.1e-12 73.9 99 44.4
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 8.1e-12 73.9 101 51.5
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 8.1e-12 73.9 92 44.6
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.1e-11 73.6 90 52.2
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.4e-11 73.2 106 45.3
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.4e-11 73.2 106 45.3
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 1.8e-11 72.8 95 50.5
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 3.1e-11 72.0 101 47.5
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.0e-11 71.6 92 46.7
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 5.2e-11 71.2 106 41.5
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.8e-11 70.9 106 44.3
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 6.8e-11 70.9 106 46.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 8.9e-11 70.5 69 55.1
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 8.9e-11 70.5 54 66.7
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 1.2e-10 70.1 99 43.4
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 2.0e-10 69.3 108 41.7
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.0e-10 69.3 54 63.0
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 2.6e-10 68.9 53 66.0
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 5.8e-10 67.8 105 41.9
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 1.9e-08 62.8 83 48.2
Nitab4.5_0000787g0030 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.2e-08 62.0 83 48.2
PGSC0003DMG400024883 Solanum tuberosum HOM05D004289 ORTHO05D005141 3.2e-08 62.0 79 49.4
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 4.1e-08 61.6 94 45.7
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 7.1e-08 60.8 89 40.4
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 1.6e-07 59.7 106 44.3
Sabra03G0002600 Salix brachista HOM05D000202 ORTHO05D000117 2.1e-07 59.3 58 60.3
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.0e-06 55.5 70 45.7
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 5.1e-06 54.7 76 40.8
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 5.1e-06 54.7 51 52.9
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.6e-06 54.3 65 44.6
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.6e-06 53.9 65 44.6


User provided reference genes

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