Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 2.1e-64 248.8 119 100.0
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 4.0e-60 234.6 119 94.1
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 7.6e-59 230.3 117 94.0
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 6.6e-55 217.2 119 85.7
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 8.7e-55 216.9 119 85.7
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 8.7e-55 216.9 119 85.7
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.3e-42 176.4 118 70.3
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 3.4e-35 151.8 118 57.6
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 2.5e-33 145.6 120 60.0
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 3.0e-31 138.7 117 57.3
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 1.3e-29 133.3 117 55.6
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 2.1e-29 132.5 117 53.8
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 6.5e-26 120.9 119 51.3
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 7.2e-25 117.5 119 49.6
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 1.2e-24 116.7 116 49.1
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 3.5e-24 115.2 117 49.6
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 1.3e-23 113.2 118 47.5
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 1.8e-20 102.8 118 44.1
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 5.3e-20 101.3 120 43.3
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 5.3e-20 101.3 118 45.8
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 6.1e-16 87.8 117 38.5
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 6.1e-16 87.8 113 38.9
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.1e-16 87.8 116 37.1
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 7.9e-16 87.4 118 39.8
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 1.4e-15 86.7 83 49.4
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-15 86.7 116 38.8
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.0e-15 85.5 123 42.3
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.0e-15 85.5 118 39.8
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 3.0e-15 85.5 126 38.1
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.1e-15 84.7 116 37.1
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 6.7e-15 84.3 123 41.5
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.7e-15 84.3 116 37.1
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 2.0e-14 82.8 119 40.3
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-14 82.8 118 34.7
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 5.7e-14 81.3 122 38.5
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 5.7e-14 81.3 122 38.5
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.4e-14 80.9 121 37.2
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-13 80.1 116 37.9
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-13 79.0 120 35.0
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.7e-13 78.6 118 34.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.8e-13 78.2 117 37.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.3e-13 77.8 114 34.2
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.3e-13 77.8 119 37.8
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.2e-13 77.4 117 33.3
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.2e-13 77.4 117 33.3
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 8.2e-13 77.4 90 42.2
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.2e-13 77.4 117 33.3
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-12 77.0 112 37.5
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-12 77.0 117 37.6
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-12 76.6 120 36.7
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-12 76.3 90 42.2
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-12 76.3 90 42.2
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.8e-12 76.3 90 42.2
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.8e-12 76.3 121 33.9
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.4e-12 75.9 90 42.2
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.4e-12 75.9 109 35.8
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 3.1e-12 75.5 90 42.2
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.1e-12 75.1 90 41.1
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-12 75.1 121 33.9
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-12 75.1 115 34.8
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 4.1e-12 75.1 114 34.2
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 6.9e-12 74.3 119 35.3
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-11 73.6 115 35.7
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.5e-11 73.2 118 38.1
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.0e-11 72.8 119 31.9
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-11 72.8 118 35.6
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-11 72.8 116 37.9
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.7e-11 70.9 90 36.7
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.7e-11 70.9 90 36.7
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.7e-11 70.9 120 33.3
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.0e-10 70.5 90 37.8
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.0e-10 70.5 89 37.1
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.3e-10 70.1 91 35.2
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.7e-10 69.7 92 41.3
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 1.7e-10 69.7 113 35.4
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-10 69.3 111 36.9
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.9e-10 68.9 90 36.7
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.9e-10 68.9 117 32.5
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 2.9e-10 68.9 112 33.0
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.5e-10 67.8 122 31.1
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 6.5e-10 67.8 91 34.1
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.5e-10 67.8 108 32.4
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 8.5e-10 67.4 110 30.0
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-09 66.6 108 34.3
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 1.9e-09 66.2 119 30.3
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 1.9e-09 66.2 111 32.4
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-09 66.2 109 33.0
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.9e-09 66.2 115 31.3
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-09 65.9 108 29.6
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 2.5e-09 65.9 118 31.4
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.2e-09 65.5 117 32.5
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.2e-09 65.5 109 33.9
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 4.2e-09 65.1 118 32.2
Sabra01G0164100 Salix brachista HOM05D002599 ORTHO05D001895 4.2e-09 65.1 120 32.5
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 4.2e-09 65.1 116 35.3
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 4.2e-09 65.1 116 35.3
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 4.2e-09 65.1 116 35.3
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 4.2e-09 65.1 116 35.3
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.5e-09 64.7 90 37.8
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.4e-09 63.9 90 34.4
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.4e-09 63.9 118 31.4
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-09 63.9 115 33.9
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-09 63.9 116 31.9
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-09 63.9 111 28.8
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-08 63.5 107 29.9
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-08 63.2 104 33.7
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-08 63.2 101 34.7
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-08 63.2 102 34.3
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-08 63.2 120 33.3
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-08 62.8 115 32.2
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-08 62.8 116 31.0
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.7e-08 62.4 118 33.1
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 2.7e-08 62.4 104 36.5
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.6e-08 62.0 103 34.0
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 3.6e-08 62.0 103 34.0
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-08 62.0 116 32.8
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-08 62.0 109 31.2
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-08 62.0 110 32.7
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 3.6e-08 62.0 118 29.7
Manes.07G022100 Manihot esculenta HOM05D021322 ORTHO05D001895 4.7e-08 61.6 104 36.5
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 4.7e-08 61.6 113 31.9
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.1e-08 61.2 124 33.9
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 6.1e-08 61.2 102 34.3
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.1e-08 61.2 109 31.2
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 6.1e-08 61.2 108 31.5
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.9e-08 60.8 118 32.2
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 7.9e-08 60.8 115 31.3
Sabra03G0008700 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-07 60.5 112 32.1
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-07 60.5 113 28.3
Duzib052G1144 Durio zibethinus HOM05D002599 ORTHO05D001895 1.4e-07 60.1 102 38.2
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 1.4e-07 60.1 113 32.7
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-07 59.7 118 30.5
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-07 59.7 109 31.2
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.3e-07 59.3 110 31.8
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 2.3e-07 59.3 102 34.3
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 2.3e-07 59.3 110 31.8
Gohir.A01G056400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-07 58.9 115 32.2
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 3.0e-07 58.9 110 30.9
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-07 58.5 109 30.3
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.1e-07 58.2 115 29.6
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 6.7e-07 57.8 118 30.5
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 6.7e-07 57.8 112 31.2
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 8.8e-07 57.4 103 33.0
Manes.07G021900 Manihot esculenta HOM05D021322 ORTHO05D001895 8.8e-07 57.4 105 35.2
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.8e-07 57.4 103 35.0
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-06 57.0 115 29.6
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-06 57.0 110 34.5
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 1.1e-06 57.0 102 33.3
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-06 57.0 110 34.5
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.1e-06 57.0 102 33.3
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-06 56.6 115 29.6
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 1.5e-06 56.6 126 34.1
Sabra01G0164500 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-06 56.6 97 30.9
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-06 56.2 113 31.9
Zm00001eb077170 Zea mays HOM05D000112 ORTHO05D010432 2.6e-06 55.8 114 36.0
Duzib052G0486 Durio zibethinus HOM05D002599 ORTHO05D001895 3.3e-06 55.5 103 34.0
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-06 55.1 107 34.6
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 5.7e-06 54.7 90 34.4
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.7e-06 54.7 117 29.1
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 7.4e-06 54.3 122 33.6
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 9.7e-06 53.9 106 33.0


User provided reference genes

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