Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 3.5e-64 248.1 119 100.0
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 1.2e-59 233.0 119 94.1
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 2.4e-57 225.3 117 92.3
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.2e-51 206.5 119 81.5
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.5e-51 206.1 119 81.5
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.5e-51 206.1 119 81.5
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 8.4e-42 173.7 118 69.5
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.9e-34 148.7 118 57.6
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 3.2e-33 145.2 120 60.8
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 1.3e-31 139.8 117 58.1
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 5.7e-30 134.4 117 56.4
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 1.3e-29 133.3 117 56.4
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 4.2e-25 118.2 119 52.1
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 1.6e-24 116.3 116 50.0
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 4.6e-24 114.8 119 50.4
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 6.1e-24 114.4 117 49.6
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 1.1e-22 110.2 118 46.6
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 2.4e-20 102.4 118 47.5
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 9.0e-20 100.5 118 44.1
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 1.0e-18 97.1 120 43.3
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 6.1e-16 87.8 113 39.8
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 6.1e-16 87.8 119 41.2
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.9e-16 87.4 116 39.7
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.0e-15 87.0 117 40.2
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-15 86.3 116 37.1
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-15 86.3 118 40.7
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-15 85.1 116 37.9
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.1e-15 84.7 116 37.9
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 6.7e-15 84.3 83 50.6
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 6.7e-15 84.3 126 38.9
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.5e-14 83.2 123 41.5
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 3.3e-14 82.0 123 40.7
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.7e-14 81.3 121 38.8
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 7.4e-14 80.9 116 38.8
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 9.7e-14 80.5 90 44.4
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.3e-13 80.1 119 39.5
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.2e-13 79.3 120 38.3
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 2.2e-13 79.3 122 38.5
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.2e-13 79.3 90 44.4
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 2.2e-13 79.3 122 38.5
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 4.8e-13 78.2 120 35.0
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 6.3e-13 77.8 117 39.3
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.2e-13 77.4 121 34.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-12 77.0 117 37.6
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-12 77.0 119 37.8
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-12 76.3 121 34.7
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.4e-12 75.9 90 43.3
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.4e-12 75.9 90 43.3
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.1e-12 75.5 90 43.3
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.1e-12 75.5 117 32.5
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 4.1e-12 75.1 90 43.3
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-12 75.1 112 37.5
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 4.1e-12 75.1 114 35.1
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 5.3e-12 74.7 119 36.1
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.3e-12 74.7 90 42.2
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.9e-12 74.3 119 34.5
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.9e-12 74.3 119 34.5
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-11 73.6 120 34.2
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.5e-11 73.2 114 33.3
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-11 72.4 124 37.1
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.4e-11 72.0 119 31.9
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-11 72.0 118 35.6
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.7e-11 70.9 119 34.5
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.7e-11 70.9 91 37.4
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.0e-10 70.5 90 37.8
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.0e-10 70.5 90 37.8
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.3e-10 70.1 92 41.3
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.3e-10 70.1 90 38.9
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.3e-10 70.1 89 38.2
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-10 70.1 117 33.3
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 1.3e-10 70.1 113 36.3
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.8e-10 68.6 122 32.8
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 3.8e-10 68.6 91 36.3
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 3.8e-10 68.6 90 37.8
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.8e-10 68.6 108 34.3
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 6.5e-10 67.8 118 33.9
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.5e-10 67.4 115 32.2
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.4e-09 66.6 118 33.1
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 1.9e-09 66.2 119 31.9
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-09 65.9 115 33.0
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 2.5e-09 65.9 112 32.1
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 2.5e-09 65.9 118 34.7
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 4.2e-09 65.1 110 30.0
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.2e-09 65.1 116 35.3
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.5e-09 64.7 119 33.6
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 5.5e-09 64.7 108 34.3
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 5.5e-09 64.7 120 30.8
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.2e-09 64.3 90 38.9
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 9.4e-09 63.9 118 31.4
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-08 63.5 117 31.6
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.2e-08 63.5 115 30.4
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-08 63.2 120 34.2
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-08 63.2 107 30.8
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.7e-08 62.4 118 32.2
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 6.1e-08 61.2 117 30.8
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 7.9e-08 60.8 118 33.1
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 7.9e-08 60.8 118 29.7
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 1.0e-07 60.5 94 39.4
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-07 60.5 116 30.2
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-07 59.7 124 33.9
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-07 59.7 107 33.6
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.3e-07 59.3 118 32.2
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-07 58.9 116 31.0
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 3.9e-07 58.5 102 33.3
Manes.07G022100 Manihot esculenta HOM05D021322 ORTHO05D001895 3.9e-07 58.5 104 35.6
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-07 58.5 115 33.0
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 5.1e-07 58.2 117 29.9
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.1e-07 58.2 115 30.4
Sabra01G0164100 Salix brachista HOM05D002599 ORTHO05D001895 8.8e-07 57.4 119 28.6
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-06 57.0 115 30.4
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-06 57.0 115 30.4
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.1e-06 57.0 118 31.4
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 2.6e-06 55.8 110 30.0
Sabra09G0045600 Salix brachista HOM05D008886 ORTHO05D001895 2.6e-06 55.8 107 31.8
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 3.3e-06 55.5 102 30.4
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.7e-06 54.7 103 32.0
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 7.4e-06 54.3 102 32.4
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 7.4e-06 54.3 102 32.4
Manes.07G021900 Manihot esculenta HOM05D021322 ORTHO05D001895 7.4e-06 54.3 105 34.3
Gorai.005G241300 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.7e-06 53.9 122 32.8


User provided reference genes

Program Settings