Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0166200 Salix brachista HOM05D001917 ORTHO05D002790 2.4e-63 245.4 126 100.0
Potri.004G219100 Populus trichocarpa HOM05D001917 ORTHO05D002790 1.5e-12 76.6 46 84.8
Eucgr.G00399 Eucalyptus grandis HOM05D001917 ORTHO05D002790 8.1e-11 70.9 46 76.1
Sopen01g046250 Solanum pennellii HOM05D001917 ORTHO05D002790 1.8e-10 69.7 42 85.7
CSS0029941 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 3.1e-10 68.9 42 85.7
Nitab4.5_0000667g0140 Nicotiana tabacum HOM05D001917 ORTHO05D002790 3.1e-10 68.9 42 85.7
Nitab4.5_0008098g0040 Nicotiana tabacum HOM05D001917 ORTHO05D002790 3.1e-10 68.9 42 85.7
Solyc01g103873.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 3.1e-10 68.9 42 85.7
Solyc01g103875.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 3.1e-10 68.9 42 85.7
Hma1.2p1_1108F.1_g257810 Hydrangea macrophylla HOM05D001917 ORTHO05D002790 5.3e-10 68.2 46 73.9
Nitab4.5_0000548g0190 Nicotiana tabacum HOM05D001917 ORTHO05D002790 5.3e-10 68.2 42 83.3
Nitab4.5_0009812g0050 Nicotiana tabacum HOM05D001917 ORTHO05D002790 5.3e-10 68.2 42 83.3
Duzib132G0781 Durio zibethinus HOM05D001917 ORTHO05D002790 6.9e-10 67.8 44 79.5
PGR142G3237 Punica granatum HOM05D001917 ORTHO05D002790 6.9e-10 67.8 46 71.7
Peaxi162Scf00003g03938 Petunia axillaris HOM05D001917 ORTHO05D002790 9.0e-10 67.4 42 83.3
Lalb_Chr13g0295631 Lupinus albus HOM05D001917 ORTHO05D002790 1.2e-09 67.0 42 83.3
RcHm_v2.0_Chr7g0220891 Rosa chinensis HOM05D001917 ORTHO05D002790 1.2e-09 67.0 42 81.0
Sopen01g046280 Solanum pennellii HOM05D001917 ORTHO05D002790 1.5e-09 66.6 42 83.3
ECA236G0104 Erigeron canadensis HOM05D001917 ORTHO05D002790 2.0e-09 66.2 42 81.0
TWI14G0546 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 2.0e-09 66.2 42 81.0
Gohir.D04G163200 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.6e-09 65.9 91 45.1
Gorai.012G151300 Gossypium raimondii HOM05D001917 ORTHO05D002790 2.6e-09 65.9 91 45.1
Manes.10G123800 Manihot esculenta HOM05D001917 ORTHO05D002790 2.6e-09 65.9 42 78.6
Thecc.02G090500 Theobroma cacao HOM05D001917 ORTHO05D002790 2.6e-09 65.9 42 81.0
FvH4_5g28730 Fragaria vesca HOM05D001917 ORTHO05D002790 3.4e-09 65.5 42 78.6
FAN13G3267 Fragaria x ananassa HOM05D001917 ORTHO05D002790 3.4e-09 65.5 41 80.5
FAN18G1669 Fragaria x ananassa HOM05D001917 ORTHO05D002790 3.4e-09 65.5 41 80.5
Lsat_1_v5_gn_6_24641 Lactuca sativa HOM05D001917 ORTHO05D002790 3.4e-09 65.5 42 81.0
Peaxi162Scf00011g00747 Petunia axillaris HOM05D001917 ORTHO05D002790 3.4e-09 65.5 41 82.9
SGA_v2.0_scaffold92G28306 Striga asiatica HOM05D001917 ORTHO05D002790 3.4e-09 65.5 42 81.0
Gohir.D04G163400 Gossypium hirsutum HOM05D001917 ORTHO05D002790 4.5e-09 65.1 42 81.0
HanXRQChr06g0181281 Helianthus annuus HOM05D001917 ORTHO05D002790 4.5e-09 65.1 42 78.6
Nitab4.5_0000948g0280 Nicotiana tabacum HOM05D001917 ORTHO05D002790 4.5e-09 65.1 40 85.0
Gohir.D02G213700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 5.8e-09 64.7 44 77.3
Manes.07G020850 Manihot esculenta HOM05D001917 ORTHO05D002790 5.8e-09 64.7 42 78.6
AUR62011669 Chenopodium quinoa HOM05D001917 ORTHO05D002790 7.6e-09 64.3 64 57.8
AUR62040515 Chenopodium quinoa HOM05D001917 ORTHO05D002790 7.6e-09 64.3 41 82.9
Dinv19392 Davidia involucrata HOM05D001917 ORTHO05D002790 7.6e-09 64.3 42 78.6
MD15G1430600 Malus domestica HOM05D001917 ORTHO05D002790 7.6e-09 64.3 42 76.2
Atru.chr6.697 Acer truncatum HOM05D001917 ORTHO05D002790 9.9e-09 63.9 43 74.4
DCAR_006686 Daucus carota HOM05D001917 ORTHO05D002790 9.9e-09 63.9 42 76.2
Duzib052G0052 Durio zibethinus HOM05D001917 ORTHO05D002790 9.9e-09 63.9 42 78.6
ECA240G0453 Erigeron canadensis HOM05D001917 ORTHO05D002790 9.9e-09 63.9 42 78.6
Lj5A255T86 Lonicera japonica HOM05D001917 ORTHO05D002790 9.9e-09 63.9 40 85.0
PSO017G7022 Papaver somniferum HOM05D001917 ORTHO05D002790 9.9e-09 63.9 43 72.1
PSO170G1283 Papaver somniferum HOM05D001917 ORTHO05D002790 9.9e-09 63.9 43 72.1
Sabra03G0007900 Salix brachista HOM05D001917 ORTHO05D002790 9.9e-09 63.9 41 80.5
THA.LOC104807120 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 9.9e-09 63.9 42 81.0
unitig_52.g17437 Utricularia gibba HOM05D001917 ORTHO05D002790 9.9e-09 63.9 42 73.8
Gohir.A04G121926 Gossypium hirsutum HOM05D001917 ORTHO05D002790 1.3e-08 63.5 90 44.4
CSS0007772 Camellia sinensis var. sinensis HOM05D001917 ORTHO05D002790 1.7e-08 63.2 41 80.5
Gorai.005G241600 Gossypium raimondii HOM05D001917 ORTHO05D002790 1.7e-08 63.2 44 75.0
CiPaw.06G144000 Carya illinoinensis HOM05D001917 ORTHO05D002790 2.2e-08 62.8 42 76.2
AUR62016492 Chenopodium quinoa HOM05D001917 ORTHO05D002790 2.2e-08 62.8 41 78.0
Gohir.A13G036500 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.2e-08 62.8 42 78.6
Gohir.D13G034800 Gossypium hirsutum HOM05D001917 ORTHO05D002790 2.2e-08 62.8 42 78.6
Gorai.013G039300 Gossypium raimondii HOM05D001917 ORTHO05D002790 2.2e-08 62.8 42 78.6
MD08G1238800 Malus domestica HOM05D001917 ORTHO05D002790 2.2e-08 62.8 42 73.8
Lalb_Chr15g0090721 Lupinus albus HOM05D001917 ORTHO05D002790 2.9e-08 62.4 45 71.1
Prupe.1G575800 Prunus persica HOM05D001917 ORTHO05D002790 2.9e-08 62.4 42 76.2
THA.LOC104823694 Tarenaya hassleriana HOM05D001917 ORTHO05D002790 2.9e-08 62.4 42 73.8
Migut.N00836 Erythranthe guttata HOM05D001917 ORTHO05D002790 3.8e-08 62.0 42 76.2
MBI03_g13496_MAGBIO Magnolia biondii HOM05D001917 ORTHO05D002790 3.8e-08 62.0 41 78.0
Carub.0002s0651 Capsella rubella HOM05D001917 ORTHO05D002790 4.9e-08 61.6 44 70.5
PSO782G0466 Papaver somniferum HOM05D001917 ORTHO05D002790 4.9e-08 61.6 78 47.4
AL2G18070 Arabidopsis lyrata HOM05D001917 ORTHO05D002790 6.4e-08 61.2 44 70.5
CiPaw.03G020100 Carya illinoinensis HOM05D001917 ORTHO05D002790 6.4e-08 61.2 50 64.0
Dinv41740 Davidia involucrata HOM05D001917 ORTHO05D002790 6.4e-08 61.2 42 73.8
PSO170G4920 Papaver somniferum HOM05D001917 ORTHO05D002790 6.4e-08 61.2 78 47.4
TAR381G1439 Trochodendron aralioides HOM05D001917 ORTHO05D002790 6.4e-08 61.2 42 73.8
arahy.Tifrunner.gnm1.ann1.900H0A Arachis hypogaea HOM05D001917 ORTHO05D002790 8.4e-08 60.8 42 73.8
arahy.Tifrunner.gnm1.ann1.AY0SR4 Arachis hypogaea HOM05D001917 ORTHO05D002790 8.4e-08 60.8 42 73.8
MSTRG.5118 Avicennia marina HOM05D001917 ORTHO05D002790 8.4e-08 60.8 42 76.2
Solyc11g020950.3 Solanum lycopersicum HOM05D001917 ORTHO05D002790 8.4e-08 60.8 42 71.4
Sopen11g011090 Solanum pennellii HOM05D001917 ORTHO05D002790 8.4e-08 60.8 42 71.4
PGSC0003DMG400009283 Solanum tuberosum HOM05D001917 ORTHO05D002790 8.4e-08 60.8 42 71.4
BcaB04g20186 Brassica carinata HOM05D001917 ORTHO05D002790 1.1e-07 60.5 42 71.4
COL.COLO4_11754 Corchorus olitorius HOM05D001917 ORTHO05D002790 1.1e-07 60.5 38 81.6
Medtr3g005230 Medicago truncatula HOM05D001917 ORTHO05D002790 1.1e-07 60.5 43 69.8
Psat1g003160 Pisum sativum HOM05D001917 ORTHO05D002790 1.1e-07 60.5 43 69.8
Sp2g05470 Schrenkiella parvula HOM05D001917 ORTHO05D002790 1.1e-07 60.5 42 71.4
Ca_13956_v3 Cicer arietinum L. HOM05D001917 ORTHO05D002790 1.4e-07 60.1 43 67.4
TPR.G25523 Trifolium pratense HOM05D001917 ORTHO05D002790 1.4e-07 60.1 43 67.4
CAN.G544.4 Capsicum annuum HOM05D001917 ORTHO05D002790 1.9e-07 59.7 42 69.0
Nitab4.5_0004437g0030 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.9e-07 59.7 42 69.0
Peaxi162Scf00391g00618 Petunia axillaris HOM05D001917 ORTHO05D002790 1.9e-07 59.7 42 69.0
BcaC04g22117 Brassica carinata HOM05D001917 ORTHO05D002790 2.4e-07 59.3 42 69.0
A09p18550 Brassica napus HOM05D001917 ORTHO05D002790 2.4e-07 59.3 42 69.0
C09p23160 Brassica napus HOM05D001917 ORTHO05D002790 2.4e-07 59.3 42 69.0
BolC9t55235H Brassica oleracea HOM05D001917 ORTHO05D002790 2.4e-07 59.3 42 69.0
BraA09t37481Z Brassica rapa HOM05D001917 ORTHO05D002790 2.4e-07 59.3 42 69.0
vmacro01735 Vaccinium macrocarpon HOM05D001917 ORTHO05D002790 2.4e-07 59.3 42 71.4
Peaxi162Scf00152g01525 Petunia axillaris HOM05D001917 ORTHO05D002790 3.2e-07 58.9 38 78.9
Zm00001eb169130 Zea mays HOM05D001917 ORTHO05D002790 3.2e-07 58.9 44 65.9
Atru.chr12.2056 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-07 58.5 58 55.2
BcaC09g49511 Brassica carinata HOM05D001917 ORTHO05D002790 4.2e-07 58.5 44 65.9
A01p28180 Brassica napus HOM05D001917 ORTHO05D002790 4.2e-07 58.5 44 65.9
C01p35740 Brassica napus HOM05D001917 ORTHO05D002790 4.2e-07 58.5 44 65.9
BolC1t03533H Brassica oleracea HOM05D001917 ORTHO05D002790 4.2e-07 58.5 44 65.9
BraA01t02948Z Brassica rapa HOM05D001917 ORTHO05D002790 4.2e-07 58.5 44 65.9
Potri.003G014800 Populus trichocarpa HOM05D001917 ORTHO05D002790 4.2e-07 58.5 34 88.2
unitig_578.g16345 Utricularia gibba HOM05D001917 ORTHO05D002790 4.2e-07 58.5 95 38.9
ATR1136G107 Amborella trichopoda HOM05D001917 ORTHO05D002790 5.5e-07 58.2 43 65.1
Os11g0218000 Oryza sativa ssp. japonica HOM05D001917 ORTHO05D002790 5.5e-07 58.2 44 63.6
Thhalv10023533m.g Eutrema salsugineum HOM05D001917 ORTHO05D002790 7.1e-07 57.8 42 66.7
Oeu049834.1 Olea europaea HOM05D001917 ORTHO05D002790 7.1e-07 57.8 40 72.5
Thhalv10023536m.g Eutrema salsugineum HOM05D001917 ORTHO05D002790 9.3e-07 57.4 42 66.7
QL09p005240 Quercus lobata HOM05D001917 ORTHO05D002790 9.3e-07 57.4 42 71.4
VMungo0251G2048 Vigna mungo HOM05D001917 ORTHO05D002790 9.3e-07 57.4 34 85.3
Aqoxy2G03360 Aquilegia oxysepala HOM05D001917 ORTHO05D002790 1.2e-06 57.0 42 64.3
Lj3g0007989 Lotus japonicus HOM05D001917 ORTHO05D002790 1.2e-06 57.0 41 70.7
HanXRQChr17g0551161 Helianthus annuus HOM05D001917 ORTHO05D002790 2.1e-06 56.2 35 80.0
Lj9C301T8 Lonicera japonica HOM05D001917 ORTHO05D002790 2.1e-06 56.2 57 56.1
Oeu049833.1 Olea europaea HOM05D001917 ORTHO05D002790 2.7e-06 55.8 40 70.0
HPP92_004469 Vanilla planifolia HOM05D001917 ORTHO05D002790 2.7e-06 55.8 42 64.3
HPP92_004486 Vanilla planifolia HOM05D001917 ORTHO05D002790 2.7e-06 55.8 42 64.3
Cpa.g.sc38.34 Carica papaya HOM05D001917 ORTHO05D002790 3.5e-06 55.5 33 84.8
Migut.C01294 Erythranthe guttata HOM05D001917 ORTHO05D002790 3.5e-06 55.5 42 61.9
Glyma.08G126500 Glycine max HOM05D001917 ORTHO05D002790 3.5e-06 55.5 33 84.8
Phvul.002G248500 Phaseolus vulgaris HOM05D001917 ORTHO05D002790 3.5e-06 55.5 33 84.8
SGA_v2.0_scaffold24G10578 Striga asiatica HOM05D001917 ORTHO05D002790 3.5e-06 55.5 42 61.9
Aa31LG2G10980 Aethionema arabicum HOM05D001917 ORTHO05D002790 4.6e-06 55.1 41 68.3
CiPaw.05G050800 Carya illinoinensis HOM05D001917 ORTHO05D002790 4.6e-06 55.1 33 84.8
SGA_v2.0_scaffold3574G54364 Striga asiatica HOM05D001917 ORTHO05D012802 6.0e-06 54.7 39 69.2
Ah.01g021660 Amaranthus hybridus HOM05D001917 ORTHO05D002790 7.9e-06 54.3 32 84.4
Os12g0194600 Oryza sativa ssp. japonica HOM05D001917 ORTHO05D002790 7.9e-06 54.3 44 59.1
Solyc10g044830.1 Solanum lycopersicum HOM05D001917 ORTHO05D002790 7.9e-06 54.3 37 75.7


User provided reference genes

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