Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 6.1e-228 793.9 426 100.0
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 7.6e-170 600.9 425 76.7
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 8.8e-158 560.8 419 72.1
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 4.1e-155 552.0 416 71.4
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 9.1e-155 550.8 420 71.0
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 7.7e-154 547.7 420 71.0
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.0e-153 547.4 413 71.7
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.1e-152 543.9 414 71.7
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.1e-152 543.9 420 70.0
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 9.4e-152 540.8 421 70.3
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 8.8e-150 534.3 421 69.6
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.1e-149 533.9 419 70.9
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.0e-149 533.1 419 69.7
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 4.4e-149 531.9 414 69.6
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.4e-149 531.9 426 69.2
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 7.4e-149 531.2 420 70.5
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.8e-148 529.3 421 69.4
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 3.7e-148 528.9 430 67.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.4e-147 526.9 419 69.7
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.8e-147 526.6 420 69.3
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.4e-147 526.2 421 68.9
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.4e-147 526.2 400 74.0
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 4.5e-146 521.9 423 69.3
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.7e-145 520.0 421 68.2
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.1e-144 517.3 420 69.5
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.9e-144 516.5 414 70.3
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.5e-144 516.2 421 67.9
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.2e-144 515.8 421 68.2
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.2e-143 513.8 423 67.6
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.6e-143 513.5 434 67.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.1e-143 513.1 418 68.4
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.7e-143 511.9 421 67.7
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.3e-141 505.8 422 67.3
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 3.7e-140 502.3 447 64.2
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 4.8e-140 501.9 423 66.9
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.4e-139 499.6 427 68.4
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 2.4e-139 499.6 422 66.6
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 3.5e-138 495.7 434 66.8
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-136 490.7 417 66.9
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.6e-135 486.9 423 67.1
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.7e-135 486.1 467 60.8
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.4e-134 483.8 419 66.1
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.8e-134 483.4 451 62.3
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 8.8e-134 481.1 429 64.3
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-133 480.3 423 65.7
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 4.4e-133 478.8 369 70.7
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 9.7e-133 477.6 413 64.9
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-132 477.2 413 64.9
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 6.3e-132 474.9 451 62.3
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 3.1e-131 472.6 419 66.1
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.6e-130 470.3 421 63.9
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.6e-130 470.3 417 64.3
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.6e-130 470.3 419 65.9
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 4.5e-130 468.8 418 64.6
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 3.8e-129 465.7 443 61.6
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 3.2e-128 462.6 423 66.2
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 7.2e-128 461.5 427 61.8
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 2.1e-127 459.9 409 65.3
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 6.1e-127 458.4 421 62.2
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.0e-126 457.6 423 65.0
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 8.8e-126 454.5 495 57.4
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 7.5e-125 451.4 412 63.8
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 3.1e-123 446.0 405 64.2
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 5.4e-123 445.3 370 67.8
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 5.4e-123 445.3 422 62.6
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.0e-122 443.4 273 90.1
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.7e-122 443.0 420 62.1
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 7.7e-122 441.4 425 61.9
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 3.8e-121 439.1 411 61.6
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 8.6e-121 438.0 420 59.0
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.5e-120 437.2 441 58.7
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.6e-119 432.6 428 60.7
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 8.0e-119 431.4 428 60.5
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 8.0e-119 431.4 424 58.7
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.0e-118 431.0 417 60.9
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.4e-118 430.6 419 61.8
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 6.8e-118 428.3 372 65.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.5e-117 427.2 378 64.0
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 7.5e-117 424.9 410 60.7
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.3e-116 424.1 416 60.6
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.3e-116 424.1 405 60.5
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.2e-116 423.3 407 62.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.2e-114 417.5 441 56.9
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 2.7e-114 416.4 415 59.8
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.7e-113 413.7 419 60.9
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 3.3e-112 409.5 400 60.2
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.6e-111 406.0 414 59.4
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 4.7e-111 405.6 399 58.4
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.8e-110 403.7 426 58.0
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 2.3e-110 403.3 412 58.3
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 3.1e-110 402.9 410 60.2
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 6.8e-110 401.7 407 60.2
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 8.9e-110 401.4 275 77.1
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.2e-109 401.0 407 59.7
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 8.3e-108 394.8 389 58.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 8.3e-108 394.8 389 58.6
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 1.1e-107 394.4 419 56.8
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 4.1e-107 392.5 424 55.9
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.2e-106 391.0 396 57.6
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.2e-106 391.0 427 57.1
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 9.5e-104 381.3 426 55.4
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 3.6e-103 379.4 421 54.4
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.0e-102 375.9 353 60.1
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 3.4e-101 372.9 399 58.1
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.7e-100 369.4 421 57.0
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 6.8e-94 348.6 314 62.7
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.2e-93 347.8 296 65.5
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.2e-93 347.8 448 49.1
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 2.4e-91 340.1 403 51.9
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 2.7e-90 336.7 398 55.0
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 2.7e-90 336.7 413 53.3
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.3e-84 317.8 252 69.4
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 9.2e-83 311.6 308 62.0
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 5.1e-81 305.8 323 55.7
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.1e-80 304.7 264 63.3
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 5.4e-75 285.8 335 51.6
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 6.0e-74 282.3 271 64.6
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 2.5e-72 276.9 399 48.1
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 9.6e-72 275.0 318 54.1
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.6e-71 274.2 271 62.4
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 8.1e-71 271.9 267 59.2
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 4.2e-67 259.6 270 57.4
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 4.2e-67 259.6 268 57.8
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 5.4e-67 259.2 269 59.5
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 5.4e-67 259.2 421 44.7
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 9.6e-64 248.4 187 69.5
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 7.6e-61 238.8 258 54.3
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 8.4e-60 235.3 338 46.7
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 8.7e-57 225.3 460 40.0
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.5e-56 223.8 453 39.7
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 3.7e-55 219.9 269 52.4
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.2e-53 214.9 194 63.9
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 6.5e-52 209.1 272 51.5
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.1e-50 204.1 134 76.1
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.0e-49 201.8 135 75.6
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.3e-47 194.9 190 60.5
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.0e-44 185.3 416 39.2
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 2.5e-43 180.6 182 58.2
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 3.7e-39 166.8 123 72.4
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 4.8e-39 166.4 157 58.0
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 3.4e-37 160.2 131 67.9
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 6.1e-34 149.4 207 44.0
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.3e-28 131.7 144 53.5
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.4e-25 121.7 233 43.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 7.7e-21 105.9 130 50.8
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 2.6e-16 90.9 181 40.9
Sabra18G0111900 Salix brachista HOM05D002151 ORTHO05D002142 7.2e-11 72.8 41 82.9
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 1.7e-07 61.6 37 73.0
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 3.7e-07 60.5 108 36.1
arahy.Tifrunner.gnm1.ann1.N6ZDP2 Arachis hypogaea HOM05D000449 ORTHO05D012477 8.3e-07 59.3 79 51.9
SabraUnG0001700 Salix brachista HOM05D001638 ORTHO05D003216 8.3e-07 59.3 38 71.1
Sabra15G0020700 Salix brachista HOM05D000662 ORTHO05D000597 3.1e-06 57.4 38 68.4
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 5.4e-06 56.6 33 72.7


User provided reference genes

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