Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 0.0e+00 1154.0 559 100.0
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.4e-256 889.4 559 79.8
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.2e-228 796.6 576 70.8
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 4.4e-226 788.1 572 68.0
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.3e-225 786.6 570 69.5
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 1.3e-225 786.6 559 70.3
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 2.7e-223 778.9 571 68.5
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 3.9e-222 775.0 563 69.4
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 8.6e-222 773.9 579 65.8
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 2.5e-221 772.3 579 65.6
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 3.3e-221 771.9 571 67.8
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 4.3e-221 771.5 563 69.3
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 5.6e-221 771.2 571 68.0
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.6e-220 769.6 559 68.5
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 8.9e-219 763.8 568 66.7
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.2e-218 763.5 564 66.8
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.5e-218 763.1 575 65.6
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.8e-218 761.1 562 66.9
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 5.8e-218 761.1 568 66.9
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 7.6e-218 760.8 566 66.3
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 7.6e-218 760.8 562 66.7
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.7e-217 759.6 570 67.2
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.7e-217 759.6 568 67.1
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 3.8e-217 758.4 567 66.1
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.9e-217 758.1 562 66.7
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 8.4e-217 757.3 563 66.1
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.4e-217 757.3 562 66.7
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.4e-216 756.5 562 66.5
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.4e-216 756.5 575 65.4
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.4e-216 756.5 567 66.1
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.9e-216 756.1 571 66.2
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.2e-216 755.4 562 66.5
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 5.4e-216 754.6 582 65.8
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 7.1e-216 754.2 564 66.5
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 2.1e-215 752.7 567 65.1
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 2.7e-215 752.3 567 66.1
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 6.0e-215 751.1 575 64.7
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.0e-214 750.4 568 66.2
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.7e-214 749.6 562 66.4
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 6.6e-214 747.7 571 65.5
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 8.7e-214 747.3 561 64.9
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.5e-213 746.5 568 65.5
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 2.5e-213 745.7 615 61.8
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 9.6e-213 743.8 566 64.7
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 1.2e-212 743.4 567 65.4
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.2e-212 743.4 564 64.9
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.2e-212 743.4 560 66.6
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 1.6e-212 743.0 568 65.1
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 2.1e-212 742.7 568 65.1
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 2.1e-212 742.7 566 64.3
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 3.6e-212 741.9 565 66.2
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 3.6e-212 741.9 568 65.3
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.1e-211 740.3 560 65.0
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-211 740.0 569 64.9
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.4e-211 740.0 564 66.1
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 9.9e-210 733.8 545 67.0
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.7e-209 733.0 572 65.4
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 1.7e-209 733.0 575 64.0
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 1.1e-208 730.3 565 65.0
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.2e-208 728.8 551 65.3
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 5.4e-208 728.0 575 63.3
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 9.3e-208 727.2 569 64.1
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 9.3e-208 727.2 568 64.6
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.2e-207 726.9 561 65.8
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.1e-207 726.1 544 67.1
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 2.1e-207 726.1 558 64.5
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 2.1e-207 726.1 571 63.9
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 4.6e-207 724.9 562 64.6
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 7.8e-207 724.2 568 64.1
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 5.1e-206 721.5 567 63.7
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 5.1e-206 721.5 569 63.3
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 6.6e-206 721.1 567 63.7
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 8.7e-206 720.7 564 63.7
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 8.7e-206 720.7 572 64.0
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 8.7e-206 720.7 576 64.2
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 8.1e-204 714.1 595 62.7
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 6.9e-203 711.1 563 63.4
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.2e-202 710.3 563 62.3
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 4.9e-201 704.9 572 62.6
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 8.4e-201 704.1 562 63.3
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.2e-199 700.3 569 62.0
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 2.1e-199 699.5 563 62.3
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 4.6e-199 698.4 566 62.4
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 2.3e-198 696.0 559 62.1
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-197 693.7 559 61.9
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 5.6e-197 691.4 559 61.4
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 5.6e-197 691.4 559 61.4
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.6e-196 689.9 563 61.8
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.6e-196 689.9 564 61.7
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 3.7e-196 688.7 563 62.0
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 9.0e-195 684.1 563 61.6
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.2e-194 683.7 563 61.5
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 2.6e-194 682.6 560 60.9
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 2.6e-194 682.6 559 61.0
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 3.4e-194 682.2 563 61.5
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 5.8e-194 681.4 559 60.6
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 6.4e-193 677.9 562 61.7
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.8e-190 669.8 495 66.7
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 3.0e-190 669.1 584 58.4
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 7.4e-189 664.5 624 55.9
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.3e-188 663.7 559 59.6
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 1.8e-187 659.8 495 65.9
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.6e-183 646.7 568 58.5
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.6e-183 646.7 527 62.8
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 1.4e-179 633.6 584 56.7
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.2e-170 604.0 508 59.3
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.4e-166 590.5 458 64.4
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 4.4e-165 585.5 497 60.2
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 2.2e-164 583.2 564 52.8
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 3.1e-163 579.3 577 50.3
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 4.1e-163 578.9 564 52.5
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 2.0e-162 576.6 444 66.2
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 7.2e-160 568.2 457 61.1
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.4e-158 563.9 457 60.8
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 6.1e-151 538.5 411 65.9
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.0e-150 535.8 411 65.7
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.7e-148 529.3 411 65.5
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 3.1e-147 526.2 426 61.5
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.9e-144 516.9 614 45.3
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 6.1e-135 485.3 412 60.9
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-134 484.6 295 76.9
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 7.8e-130 468.4 446 56.3
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.3e-129 467.6 436 57.1
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 2.9e-129 466.5 418 59.6
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 8.6e-129 464.9 409 59.9
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 7.0e-115 418.7 412 55.6
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.7e-103 379.4 221 79.2
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 1.0e-97 361.7 550 38.2
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 8.4e-92 342.0 478 40.8
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 5.4e-91 339.3 223 69.1
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 2.2e-84 317.4 513 37.0
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 8.4e-84 315.5 295 57.6
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.5e-80 303.9 190 78.4
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.5e-75 286.2 158 83.5
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.5e-75 286.2 158 83.5
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.9e-73 280.0 158 82.9
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 2.7e-58 230.7 229 52.4
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.4e-49 201.8 493 29.8
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.8e-44 183.7 106 81.1
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.7e-42 177.6 106 79.2
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.7e-42 176.8 93 88.2
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.7e-42 176.8 93 88.2
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 3.9e-41 173.7 135 59.3
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.4e-38 164.5 91 83.5
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 2.9e-36 157.5 119 65.5
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 7.2e-27 126.3 76 84.2
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 9.8e-24 115.9 67 77.6
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 1.9e-19 101.7 87 56.3
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.2e-19 100.5 65 67.7
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.5e-16 89.7 70 65.7
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 3.3e-11 74.3 122 39.3
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.2e-10 72.4 69 56.5


User provided reference genes

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