Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 0.0e+00 1332.8 694 100.0
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.2e-308 1062.8 708 80.8
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 9.4e-202 707.6 750 54.3
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 1.5e-199 700.3 760 54.7
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.1e-197 692.6 720 55.8
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 4.1e-197 692.2 721 55.5
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 6.5e-195 684.9 711 55.7
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.0e-192 677.6 662 58.6
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 8.8e-192 674.5 716 55.2
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.2e-191 674.1 667 57.7
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 2.6e-191 672.9 762 53.1
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 9.8e-191 671.0 676 56.8
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 6.3e-190 668.3 712 54.9
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 2.4e-189 666.4 713 55.1
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 7.0e-189 664.8 707 56.2
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.0e-187 661.0 548 64.8
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 3.0e-184 649.4 540 64.4
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 5.2e-184 648.7 587 59.8
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 1.5e-183 647.1 725 53.2
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.3e-182 644.0 706 53.4
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 2.2e-182 643.3 547 62.0
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 1.8e-181 640.2 586 59.6
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 3.2e-181 639.4 711 53.4
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 3.2e-181 639.4 725 53.4
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 9.2e-181 637.9 547 63.1
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.2e-180 637.5 721 53.0
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 4.6e-180 635.6 734 53.5
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 5.9e-180 635.2 734 53.5
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 7.8e-180 634.8 702 53.8
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 1.7e-179 633.6 750 52.0
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 6.6e-179 631.7 605 57.5
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 1.5e-178 630.6 720 52.4
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 1.9e-178 630.2 781 50.7
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 5.6e-178 628.6 573 59.9
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 7.3e-178 628.2 574 59.1
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 4.7e-177 625.5 575 59.3
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 8.0e-177 624.8 717 52.2
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.4e-176 624.0 542 61.1
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 2.6e-175 619.8 569 61.2
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 2.6e-175 619.8 643 55.1
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 3.4e-175 619.4 541 60.8
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 5.8e-175 618.6 814 47.9
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 9.8e-175 617.8 568 60.7
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 9.8e-175 617.8 566 59.4
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 9.8e-175 617.8 541 60.6
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.3e-174 617.5 597 57.3
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.3e-174 617.5 597 57.3
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 4.9e-174 615.5 553 59.7
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 6.4e-174 615.1 553 59.7
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 1.1e-173 614.4 583 58.0
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.9e-173 613.6 642 55.1
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 3.2e-173 612.8 588 58.2
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 7.0e-173 611.7 570 58.6
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.2e-172 610.9 721 51.3
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 3.5e-172 609.4 708 51.3
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 4.6e-172 609.0 775 50.2
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 6.0e-172 608.6 557 60.3
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 6.0e-172 608.6 722 52.6
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 7.8e-172 608.2 716 50.7
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 5.0e-171 605.5 707 50.9
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 8.6e-171 604.7 528 62.3
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 9.5e-170 601.3 587 57.4
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 9.5e-170 601.3 551 59.2
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.2e-169 600.9 714 51.3
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.6e-169 600.5 552 59.1
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 3.1e-168 596.3 712 49.7
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 3.1e-168 596.3 716 49.6
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.5e-167 594.0 575 58.8
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 2.0e-167 593.6 724 50.1
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 2.6e-167 593.2 627 54.2
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.4e-167 592.8 558 60.8
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.7e-166 590.5 586 54.8
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 2.9e-166 589.7 666 53.2
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 2.4e-165 586.6 552 61.4
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 4.1e-165 585.9 735 48.3
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 9.2e-165 584.7 553 59.5
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 2.7e-164 583.2 729 50.9
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 6.0e-164 582.0 546 58.2
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 7.3e-162 575.1 717 49.9
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 2.1e-161 573.5 561 56.7
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 2.4e-160 570.1 609 52.7
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 4.0e-160 569.3 583 55.7
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.5e-159 567.4 643 52.4
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.3e-158 564.3 552 57.1
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 3.8e-158 562.8 553 56.2
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 1.4e-157 560.8 603 53.4
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 4.6e-156 555.8 702 49.7
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 2.3e-155 553.5 553 55.7
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 6.6e-155 552.0 608 54.3
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 1.1e-152 544.7 585 52.0
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 4.0e-152 542.7 454 63.2
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 5.1e-147 525.8 456 63.6
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 8.4e-142 508.4 579 53.0
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.5e-140 503.1 592 50.0
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 1.0e-139 501.5 718 46.7
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 9.6e-138 495.0 672 47.8
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.2e-134 483.8 545 49.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.9e-133 480.7 454 60.4
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 5.1e-131 472.6 463 60.0
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 9.0e-128 461.8 581 46.6
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.1e-122 444.9 578 46.4
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 1.5e-122 444.5 542 50.6
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 7.4e-122 442.2 446 55.2
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 8.8e-115 418.7 362 64.6
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.2e-111 408.3 356 64.3
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.6e-108 396.7 562 42.2
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 9.7e-106 388.7 535 46.0
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.7e-105 387.9 489 48.1
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 3.7e-97 360.1 393 52.2
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.1e-93 348.6 437 47.1
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.1e-93 348.6 612 37.9
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.0e-91 340.5 411 51.6
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 2.2e-89 334.3 547 40.2
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 3.5e-87 327.0 399 46.4
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.5e-85 319.7 406 49.0
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 5.2e-83 313.2 307 55.7
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 7.5e-82 309.3 334 55.4
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 9.8e-82 308.9 551 36.7
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 3.8e-78 297.0 367 52.0
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 6.6e-78 296.2 208 73.6
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 6.1e-76 289.7 393 47.1
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 8.0e-76 289.3 390 46.7
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 3.4e-74 283.9 249 60.2
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 5.7e-74 283.1 610 33.3
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 2.7e-71 274.2 514 38.1
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 3.3e-69 267.3 192 75.5
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 1.5e-66 258.5 311 49.2
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 4.6e-63 246.9 353 45.0
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.0e-62 245.7 194 66.0
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 3.2e-56 224.2 279 50.5
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 7.0e-56 223.0 178 66.9
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 7.3e-53 213.0 155 76.1
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 1.9e-45 188.3 717 25.9
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.6e-44 184.1 157 65.6
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.5e-42 178.7 318 36.2
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.1e-40 172.6 141 66.7
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 1.9e-40 171.8 116 75.0
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 9.2e-40 169.5 291 37.1
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.6e-39 168.7 290 36.9
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 1.7e-33 148.7 201 47.8
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 2.4e-32 144.8 310 35.8
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 1.2e-31 142.5 132 53.8
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.3e-29 134.4 169 45.0
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 5.6e-29 133.7 119 56.3
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.4e-27 129.0 270 35.9
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.4e-27 129.0 274 33.9
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 2.6e-26 124.8 269 34.6
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-22 111.7 135 45.9
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 1.1e-21 109.4 166 44.6
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 1.4e-19 102.4 144 43.1
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 1.1e-16 92.8 54 79.6
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.1e-16 92.8 51 88.2
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 3.2e-16 91.3 127 44.1
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 7.1e-16 90.1 70 61.4
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 7.9e-15 86.7 83 56.6
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.3e-14 85.9 59 74.6
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.8e-14 85.5 64 64.1
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 1.6e-12 79.0 53 69.8
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 8.2e-12 76.6 54 63.0
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.1e-11 74.7 70 45.7
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 1.2e-10 72.8 51 64.7
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 7.6e-10 70.1 51 60.8
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 1.0e-09 69.7 86 50.0
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 2.9e-09 68.2 51 58.8
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 8.4e-09 66.6 96 41.7
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.2e-07 62.8 152 29.6
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 3.9e-06 57.8 64 54.7
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 6.7e-06 57.0 40 70.0


User provided reference genes

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