Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 8.8e-57 223.4 113 100.0
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 1.0e-20 103.6 64 85.9
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 1.5e-16 89.7 58 77.6
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 4.4e-16 88.2 50 80.0
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 1.7e-15 86.3 50 86.0
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 2.2e-15 85.9 50 84.0
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 3.7e-15 85.1 59 71.2
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 4.9e-15 84.7 64 65.6
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 4.9e-15 84.7 63 68.3
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 6.4e-15 84.3 64 65.6
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 8.3e-15 84.0 48 83.3
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 8.3e-15 84.0 59 67.8
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 1.1e-14 83.6 58 69.0
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 1.1e-14 83.6 54 81.5
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 1.4e-14 83.2 50 78.0
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 5.4e-14 81.3 55 74.5
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 7.0e-14 80.9 70 60.0
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 7.0e-14 80.9 50 78.0
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 9.2e-14 80.5 64 62.5
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 1.2e-13 80.1 58 70.7
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 1.2e-13 80.1 50 76.0
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 1.2e-13 80.1 53 75.5
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 1.6e-13 79.7 59 69.5
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 1.6e-13 79.7 43 86.0
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 2.0e-13 79.3 51 74.5
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 2.0e-13 79.3 51 74.5
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 2.0e-13 79.3 61 65.6
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 3.5e-13 78.6 43 86.0
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 4.6e-13 78.2 59 66.1
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 6.0e-13 77.8 53 66.0
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 6.0e-13 77.8 57 70.2
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 6.0e-13 77.8 57 70.2
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 6.0e-13 77.8 50 74.0
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 7.8e-13 77.4 60 65.0
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 1.0e-12 77.0 46 76.1
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.3e-12 76.6 41 87.8
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 1.7e-12 76.3 46 76.1
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 2.3e-12 75.9 50 76.0
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 3.0e-12 75.5 63 63.5
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 3.0e-12 75.5 44 79.5
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 3.0e-12 75.5 60 60.0
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 3.0e-12 75.5 60 60.0
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 3.0e-12 75.5 52 69.2
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 6.6e-12 74.3 49 69.4
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 1.1e-11 73.6 49 75.5
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 1.5e-11 73.2 47 70.2
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 2.5e-11 72.4 53 66.0
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 2.5e-11 72.4 56 62.5
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 3.3e-11 72.0 47 68.1
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 4.3e-11 71.6 54 68.5
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 4.3e-11 71.6 60 66.7
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 1.6e-10 69.7 42 78.6
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 6.2e-10 67.8 47 68.1
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 6.2e-10 67.8 61 55.7
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 8.1e-10 67.4 47 70.2
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 5.2e-09 64.7 43 74.4
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 6.8e-09 64.3 47 66.0
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 8.9e-09 63.9 57 54.4
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 2.6e-08 62.4 49 61.2
Sabra06G0129100 Salix brachista HOM05D008240 ORTHO05D010333 1.7e-07 59.7 46 71.7
Sabra12G0001400 Salix brachista HOM05D008240 ORTHO05D010333 1.7e-07 59.7 51 64.7
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 2.9e-07 58.9 40 65.0
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 2.9e-07 58.9 38 71.1
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 2.4e-06 55.8 45 60.0


User provided reference genes

Program Settings