Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 6.0e-126 454.1 222 100.0
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.3e-112 409.8 222 91.4
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 5.2e-77 291.6 173 81.5
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 7.5e-76 287.7 213 69.5
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 9.7e-76 287.3 196 73.0
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 2.8e-75 285.8 219 70.3
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 4.8e-75 285.0 210 72.9
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 4.8e-75 285.0 219 67.6
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.7e-73 279.3 215 70.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 5.9e-73 278.1 207 70.5
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 1.0e-72 277.3 197 71.1
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 2.2e-72 276.2 145 87.6
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.2e-72 276.2 200 70.5
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.2e-72 276.2 220 66.8
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 3.8e-72 275.4 183 74.3
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 5.0e-72 275.0 222 63.5
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 5.0e-72 275.0 200 69.5
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 6.5e-72 274.6 217 65.0
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 6.5e-72 274.6 219 68.5
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.5e-71 273.5 192 72.4
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.5e-71 273.5 181 71.8
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.9e-71 273.1 202 69.8
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.9e-71 273.1 202 69.8
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 2.5e-71 272.7 221 60.6
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 3.2e-71 272.3 219 63.0
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 5.5e-71 271.6 224 66.5
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 5.5e-71 271.6 145 83.4
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 7.2e-71 271.2 233 63.1
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.2e-70 270.4 209 69.9
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.2e-70 270.4 219 66.7
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 2.7e-70 269.2 207 63.8
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 4.7e-70 268.5 220 63.2
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 6.1e-70 268.1 180 74.4
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 1.0e-69 267.3 221 61.1
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 1.0e-69 267.3 221 61.1
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.4e-69 266.9 223 61.9
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.8e-69 266.5 193 67.9
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.3e-69 266.2 232 63.8
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 3.0e-69 265.8 182 71.4
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 4.0e-69 265.4 222 61.7
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.0e-69 265.4 193 68.4
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 5.2e-69 265.0 193 68.4
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 5.2e-69 265.0 226 63.7
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 8.8e-69 264.2 219 63.9
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 2.0e-68 263.1 163 76.1
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 2.6e-68 262.7 186 71.5
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 3.4e-68 262.3 152 79.6
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 3.4e-68 262.3 167 76.0
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 4.4e-68 261.9 212 63.2
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 4.4e-68 261.9 186 69.4
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 9.8e-68 260.8 203 65.0
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.2e-67 259.6 200 64.0
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 2.2e-67 259.6 149 81.2
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 3.7e-67 258.8 218 61.9
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 3.7e-67 258.8 225 61.8
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.4e-66 256.9 187 67.4
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.8e-66 256.5 200 65.0
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.8e-66 256.5 145 79.3
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 1.8e-66 256.5 193 66.3
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 1.8e-66 256.5 163 75.5
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 4.1e-66 255.4 180 68.9
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 9.1e-66 254.2 211 63.0
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.2e-65 253.8 214 66.4
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.2e-65 253.8 144 82.6
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.2e-65 253.8 217 63.6
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.2e-65 253.8 200 63.5
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 2.0e-65 253.1 145 77.9
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 2.7e-65 252.7 217 63.6
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 2.7e-65 252.7 212 63.7
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 3.5e-65 252.3 211 63.0
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 3.5e-65 252.3 217 64.5
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 4.5e-65 251.9 200 62.0
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.5e-65 251.9 240 59.2
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 4.5e-65 251.9 172 70.3
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 5.9e-65 251.5 144 79.9
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 5.9e-65 251.5 144 79.9
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 1.0e-64 250.8 155 76.8
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 1.3e-64 250.4 195 68.2
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 3.8e-64 248.8 148 78.4
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 8.5e-64 247.7 186 63.4
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 3.2e-63 245.7 147 73.5
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.0e-61 240.7 204 66.7
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.8e-61 240.0 181 66.3
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 2.3e-61 239.6 139 74.8
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 2.8e-59 232.6 124 82.3
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 4.9e-59 231.9 125 84.8
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.1e-58 228.8 209 60.8
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.6e-57 226.9 210 60.0
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.0e-57 226.5 171 64.9
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 7.7e-57 224.6 174 69.5
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.3e-55 219.2 162 71.6
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 5.6e-55 218.4 124 79.0
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 7.3e-55 218.0 189 60.8
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 7.3e-55 218.0 196 59.2
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 9.5e-55 217.6 162 70.4
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.4e-53 213.8 187 59.4
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 1.8e-53 213.4 142 64.1
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 6.8e-53 211.5 147 70.1
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.6e-52 209.5 217 55.3
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.6e-52 209.5 217 55.3
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 2.6e-52 209.5 124 76.6
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 1.7e-51 206.8 143 67.8
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.9e-51 206.1 221 50.7
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 5.9e-49 198.4 139 61.9
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 2.3e-48 196.4 144 63.9
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 8.6e-48 194.5 112 83.9
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 4.3e-47 192.2 101 86.1
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 2.1e-46 189.9 108 83.3
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 8.0e-46 188.0 170 57.1
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.8e-45 186.8 153 60.1
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.8e-45 186.8 139 61.2
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 2.0e-44 183.3 102 82.4
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 3.4e-44 182.6 99 81.8
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 4.9e-43 178.7 124 66.9
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.9e-43 178.7 124 66.9
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.1e-42 177.6 115 70.4
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 2.4e-42 176.4 144 59.7
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 4.1e-42 175.6 133 60.2
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 9.2e-42 174.5 109 67.9
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.6e-41 173.7 172 50.0
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 3.6e-38 162.5 223 45.3
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 6.4e-35 151.8 99 61.6
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 4.1e-34 149.1 127 63.0
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.8e-29 133.7 142 46.5
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 2.0e-28 130.2 75 77.3
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 3.4e-28 129.4 73 82.2
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 9.9e-28 127.9 117 54.7
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 9.9e-28 127.9 73 80.8
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 2.2e-27 126.7 73 80.8
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 2.9e-27 126.3 68 85.3
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 4.9e-27 125.6 77 70.1
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.1e-26 122.5 91 67.0
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 7.3e-23 111.7 85 65.9
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.1e-21 106.3 90 54.4
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 3.1e-21 106.3 63 69.8
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.5e-20 104.0 56 83.9
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 2.6e-20 103.2 61 77.0
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 4.4e-20 102.4 63 68.3
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 1.1e-18 97.8 74 63.5
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 6.0e-17 92.0 58 72.4
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 6.0e-17 92.0 80 52.5
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 8.1e-14 81.6 50 76.0
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 1.9e-10 70.5 96 41.7
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 1.5e-07 60.8 33 78.8


User provided reference genes

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