Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.4e-90 336.3 169 100.0
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 8.8e-69 263.8 151 86.8
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.5e-68 263.1 151 86.1
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.7e-67 258.5 151 84.8
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.8e-67 258.1 164 79.9
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-66 256.9 151 85.4
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.4e-66 256.5 151 82.8
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 7.0e-66 254.2 150 83.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 9.1e-66 253.8 151 82.1
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 9.1e-66 253.8 151 84.1
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.2e-65 253.4 152 82.2
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-65 253.1 148 84.5
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.5e-65 251.9 151 83.4
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-64 250.0 150 82.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.3e-64 250.0 156 76.3
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.5e-64 247.7 151 82.8
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 8.5e-64 247.3 151 78.8
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.5e-64 247.3 154 78.6
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.9e-63 246.1 151 78.1
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.5e-63 245.7 150 80.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 2.5e-63 245.7 151 78.8
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.5e-63 245.7 151 79.5
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.2e-63 245.4 152 77.6
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 4.2e-63 245.0 151 78.1
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.5e-63 244.6 150 79.3
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 5.5e-63 244.6 151 78.1
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 5.5e-63 244.6 145 82.8
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 5.5e-63 244.6 151 77.5
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.2e-63 244.2 152 77.0
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 9.4e-63 243.8 164 72.0
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 1.2e-62 243.4 152 78.3
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.2e-62 243.4 151 78.8
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.6e-62 243.0 150 80.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 4.7e-62 241.5 151 77.5
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 4.7e-62 241.5 152 77.0
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 6.1e-62 241.1 159 71.7
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.0e-62 240.7 151 79.5
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.0e-61 240.4 154 76.6
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.4e-61 240.0 151 74.8
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.4e-61 240.0 151 76.2
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.8e-61 239.6 151 76.2
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.8e-61 239.6 155 74.8
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 2.3e-61 239.2 151 76.8
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.3e-61 239.2 150 76.7
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 3.0e-61 238.8 151 76.8
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.0e-61 238.8 150 76.0
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 3.9e-61 238.4 155 75.5
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 3.9e-61 238.4 151 76.2
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 3.9e-61 238.4 152 78.3
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.9e-61 238.4 151 76.2
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 5.2e-61 238.0 151 75.5
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 5.2e-61 238.0 151 75.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.7e-61 237.7 151 79.5
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 6.7e-61 237.7 151 75.5
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 8.8e-61 237.3 151 75.5
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 8.8e-61 237.3 147 79.6
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 8.8e-61 237.3 151 74.8
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 8.8e-61 237.3 152 76.3
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 8.8e-61 237.3 150 76.0
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 8.8e-61 237.3 145 78.6
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 1.5e-60 236.5 151 75.5
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.5e-60 236.5 151 76.2
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.0e-60 236.1 151 75.5
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 2.0e-60 236.1 150 76.7
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.0e-60 236.1 154 76.0
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 2.0e-60 236.1 151 76.2
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.6e-60 235.7 150 77.3
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.3e-60 235.3 151 76.2
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.7e-60 234.6 154 75.3
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 5.7e-60 234.6 150 76.0
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 7.4e-60 234.2 151 74.8
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 7.4e-60 234.2 153 76.5
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 7.4e-60 234.2 151 75.5
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 9.7e-60 233.8 151 74.2
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-59 233.4 153 75.2
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.3e-59 233.4 151 74.8
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 1.7e-59 233.0 149 75.8
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.2e-59 232.6 152 75.7
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 2.2e-59 232.6 151 75.5
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.8e-59 232.3 151 71.5
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.7e-59 231.9 151 74.2
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 4.8e-59 231.5 151 74.2
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 4.8e-59 231.5 151 74.2
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 6.3e-59 231.1 151 72.2
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.1e-58 230.3 150 76.0
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 1.4e-58 229.9 151 72.2
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.8e-58 229.6 151 74.8
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.8e-58 229.6 153 73.2
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.8e-58 229.6 151 72.8
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 4.1e-58 228.4 151 71.5
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 4.1e-58 228.4 153 75.2
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 5.3e-58 228.0 151 72.8
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.2e-57 226.9 153 71.9
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 2.0e-57 226.1 149 73.8
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.6e-57 225.7 149 72.5
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 7.7e-57 224.2 152 71.7
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 1.0e-56 223.8 162 72.2
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.0e-56 223.8 151 70.9
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.7e-56 223.0 148 77.7
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 2.2e-56 222.6 151 72.2
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 1.9e-55 219.5 150 71.3
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 3.6e-54 215.3 160 63.1
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 3.6e-54 215.3 150 66.0
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 4.7e-54 214.9 150 68.0
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 6.1e-54 214.5 150 67.3
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.0e-53 213.8 150 67.3
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.0e-53 213.8 151 67.5
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.4e-53 213.4 150 66.7
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.8e-53 213.0 166 62.7
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 2.3e-53 212.6 150 66.0
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 2.3e-53 212.6 150 66.0
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 4.0e-53 211.8 150 68.0
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 8.8e-53 210.7 150 66.7
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 8.8e-53 210.7 154 64.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.5e-52 209.9 155 63.9
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 2.0e-52 209.5 151 68.2
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.0e-52 209.5 152 66.4
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 4.4e-52 208.4 150 66.0
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.7e-52 208.0 151 66.9
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 5.7e-52 208.0 151 66.2
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 5.3e-50 201.4 168 58.9
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.3e-50 201.4 150 67.3
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.0e-48 197.2 143 69.2
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.6e-46 189.9 149 60.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 8.0e-46 187.6 150 60.0
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 1.4e-45 186.8 145 57.9
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.8e-45 184.1 153 62.7
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.6e-44 182.6 120 75.0
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 3.4e-44 182.2 119 73.9
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 7.5e-44 181.0 117 73.5
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 7.2e-39 164.5 125 62.4
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 9.5e-39 164.1 179 54.7
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 4.7e-38 161.8 109 67.9
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.8e-37 159.8 149 53.0
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 4.4e-36 155.2 109 64.2
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 3.5e-33 145.6 121 62.0
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 5.0e-32 141.7 95 73.7
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 7.3e-31 137.9 149 45.6
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.2e-27 126.3 100 65.0
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.2e-27 126.3 73 78.1
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.9e-27 125.9 76 80.3
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 2.7e-25 119.4 73 74.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 7.8e-25 117.9 144 45.1
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 2.5e-23 112.8 75 73.3
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 2.5e-23 112.8 75 73.3
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 5.6e-23 111.7 75 74.7
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 2.8e-22 109.4 75 72.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 4.7e-22 108.6 78 70.5
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.2e-22 108.2 67 76.1
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.5e-20 103.6 65 73.8
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 8.6e-16 87.8 149 36.2
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.0e-08 64.3 48 68.8
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.6e-06 55.8 49 59.2


User provided reference genes

Program Settings