Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 0.0e+00 1172.9 828 100.0
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.7e-218 763.5 837 69.7
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 5.7e-121 439.5 788 47.0
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 3.6e-107 393.7 833 46.3
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 4.7e-107 393.3 840 52.9
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 4.1e-103 380.2 828 48.9
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 8.6e-101 372.5 828 48.4
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 6.1e-99 366.3 677 49.5
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 4.1e-95 353.6 789 43.5
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.7e-93 348.2 772 38.9
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 5.0e-93 346.7 827 49.3
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 9.5e-92 342.4 805 50.3
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.7e-88 331.6 790 43.3
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 8.3e-88 329.3 654 58.0
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 2.1e-86 324.7 746 40.6
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 5.1e-85 320.1 786 49.7
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.8e-83 314.3 621 43.5
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.4e-82 312.0 622 44.4
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 4.0e-82 310.5 803 44.8
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.9e-82 309.3 819 41.3
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.9e-80 303.5 625 43.0
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 9.2e-79 299.3 766 38.9
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.1e-77 293.5 627 37.0
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.6e-75 288.5 586 53.2
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.8e-75 287.7 612 37.6
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.8e-74 285.0 627 36.5
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 6.8e-74 283.1 675 41.5
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.6e-73 281.2 619 41.4
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.1e-71 275.8 819 44.7
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.9e-71 275.0 814 46.8
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 2.4e-71 274.6 619 45.1
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 2.4e-71 274.6 818 45.2
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 7.1e-71 273.1 548 52.0
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 9.3e-71 272.7 778 43.8
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.7e-70 271.2 821 41.9
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 8.7e-69 266.2 777 38.9
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 2.5e-68 264.6 634 47.8
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 4.3e-68 263.8 830 44.7
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 5.6e-68 263.5 623 44.6
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 5.3e-66 256.9 702 48.1
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 9.0e-66 256.1 830 43.5
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 3.4e-65 254.2 822 43.1
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 2.2e-64 251.5 819 37.6
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 4.9e-64 250.4 675 47.6
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.9e-63 248.4 669 39.0
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 4.2e-63 247.3 776 41.2
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 7.1e-63 246.5 829 33.4
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 2.5e-60 238.0 618 42.7
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 9.6e-60 236.1 620 41.0
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.1e-58 232.6 832 47.7
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 6.9e-58 229.9 786 37.4
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.5e-57 228.8 814 42.9
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.6e-57 228.0 777 45.6
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.8e-57 226.9 832 47.2
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.7e-56 225.3 594 37.0
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 2.9e-56 224.6 833 38.3
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.9e-56 224.6 803 45.2
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 5.5e-55 220.3 830 40.7
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 5.5e-55 220.3 451 41.9
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 4.6e-54 217.2 611 32.9
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 5.1e-53 213.8 802 39.2
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 1.5e-52 212.2 561 37.3
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 3.7e-51 207.6 804 43.7
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.4e-50 205.7 798 38.5
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 5.3e-50 203.8 825 41.3
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.2e-49 202.6 785 40.0
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.5e-49 200.7 460 40.0
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.0e-48 199.5 828 39.9
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 4.9e-48 197.2 594 35.9
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 8.4e-48 196.4 787 37.1
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.5e-47 194.9 598 30.8
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 9.3e-47 193.0 624 38.9
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 6.0e-46 190.3 618 33.2
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 1.8e-45 188.7 850 34.9
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 3.0e-45 188.0 753 30.8
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.1e-44 186.0 611 28.8
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.5e-44 185.7 606 40.8
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 3.3e-44 184.5 679 42.3
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.6e-43 182.2 823 38.8
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.8e-42 178.7 775 33.9
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.1e-42 177.6 832 43.9
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 4.1e-42 177.6 424 40.8
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.0e-40 172.9 625 32.8
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.2e-40 171.8 425 46.8
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 2.9e-40 171.4 641 41.7
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 6.5e-40 170.2 598 41.3
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.1e-39 169.5 332 39.8
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.2e-38 166.0 795 30.7
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 6.1e-38 163.7 347 48.1
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.0e-37 162.9 456 41.0
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.0e-37 162.9 456 41.0
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.0e-37 162.9 456 41.0
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 3.0e-37 161.4 597 31.8
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.9e-36 158.7 605 38.8
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 4.3e-36 157.5 781 36.6
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 1.3e-35 156.0 464 34.5
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.8e-34 152.1 467 43.9
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.8e-34 152.1 467 43.9
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.8e-34 152.1 455 38.0
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 1.8e-34 152.1 450 38.7
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 3.1e-34 151.4 576 41.0
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 3.1e-34 151.4 619 29.6
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 3.1e-34 151.4 766 46.0
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 6.9e-34 150.2 866 33.0
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 4.5e-33 147.5 826 39.6
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 4.5e-33 147.5 613 37.7
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 5.9e-33 147.1 461 36.4
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.7e-32 145.6 519 38.9
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 2.2e-32 145.2 327 49.5
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.0e-32 144.1 362 35.1
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.1e-31 142.9 450 42.7
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.4e-31 142.5 828 43.5
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 4.2e-31 141.0 456 45.0
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.1e-30 138.7 512 34.2
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 2.7e-30 138.3 825 34.9
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 3.6e-30 137.9 789 43.2
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 7.9e-30 136.7 620 35.3
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 7.9e-30 136.7 741 32.5
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 5.1e-29 134.0 616 35.1
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.1e-28 132.9 615 35.1
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.7e-27 127.9 655 24.0
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 6.9e-26 123.6 756 35.8
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.2e-25 122.9 816 23.4
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.0e-25 122.1 426 45.1
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 2.0e-25 122.1 90 77.8
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.7e-24 119.0 252 36.9
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 2.2e-24 118.6 116 60.3
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 8.5e-24 116.7 637 28.4
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.4e-23 115.9 96 66.7
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 6.7e-21 107.1 511 39.5
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 2.0e-20 105.5 604 28.5
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 7.4e-20 103.6 698 28.7
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.8e-19 101.7 326 31.9
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 2.4e-18 98.6 598 35.5
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 2.6e-17 95.1 845 31.5
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 3.5e-17 94.7 382 24.9
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 7.7e-17 93.6 148 43.2
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 2.9e-16 91.7 184 34.2
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 2.1e-14 85.5 611 37.5
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.1e-14 84.0 84 57.1
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 8.0e-14 83.6 240 25.4
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 4.0e-13 81.3 338 40.8
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 4.0e-13 81.3 338 40.8
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 6.7e-13 80.5 377 29.4
TAR636G1625 Trochodendron aralioides HOM05D004642 ORTHO05D005466 4.4e-12 77.8 60 65.0
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.8e-11 75.1 76 53.9
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 6.3e-11 73.9 375 32.0
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 7.7e-09 67.0 603 27.2
CSS0005738 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 2.1e-06 58.9 45 62.2
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 6.1e-06 57.4 276 46.7


User provided reference genes

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