Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 5.3e-198 694.1 340 100.0
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 4.8e-151 538.1 284 93.7
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 7.8e-125 451.1 329 67.5
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 5.1e-124 448.4 337 65.3
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 1.4e-121 440.3 341 65.4
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 4.1e-118 428.7 330 65.5
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 2.7e-117 426.0 332 65.4
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 2.7e-117 426.0 333 68.2
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 6.6e-116 421.4 329 64.4
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 1.5e-115 420.2 327 64.8
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 3.3e-115 419.1 330 63.9
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 9.6e-115 417.5 328 64.6
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 8.1e-114 414.5 330 65.5
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 1.8e-113 413.3 324 64.2
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 5.2e-113 411.8 328 64.3
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.2e-112 410.6 340 62.4
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 3.4e-112 409.1 340 62.9
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 9.9e-112 407.5 329 61.1
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 6.4e-111 404.8 335 62.7
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 6.4e-111 404.8 331 65.6
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 4.2e-110 402.1 348 61.8
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 9.3e-110 401.0 358 60.3
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 2.1e-109 399.8 331 63.1
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 6.0e-109 398.3 336 61.0
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 7.8e-109 397.9 345 60.0
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 1.3e-108 397.1 358 60.9
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 3.9e-108 395.6 327 63.0
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 1.1e-107 394.0 326 60.7
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.5e-107 393.7 339 60.8
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 1.9e-107 393.3 328 61.0
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 1.9e-107 393.3 331 61.3
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 5.6e-107 391.7 322 62.4
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 2.1e-106 389.8 335 60.9
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 1.4e-105 387.1 383 54.6
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 4.0e-105 385.6 330 60.6
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 2.0e-104 383.3 326 61.7
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 2.0e-104 383.3 327 60.6
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 4.4e-104 382.1 331 59.8
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 4.4e-104 382.1 331 59.8
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 7.6e-104 381.3 336 58.9
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 1.3e-103 380.6 333 59.8
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 1.7e-103 380.2 331 60.4
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 4.9e-103 378.6 327 59.3
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 6.4e-103 378.3 326 61.3
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 8.4e-103 377.9 335 59.4
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 2.4e-102 376.3 331 59.8
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 2.4e-102 376.3 328 60.1
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 7.1e-102 374.8 327 60.6
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 9.3e-102 374.4 328 58.8
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 1.2e-101 374.0 328 60.7
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 4.6e-101 372.1 328 60.7
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 1.3e-100 370.5 329 60.2
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 1.3e-100 370.5 343 57.7
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 2.3e-100 369.8 327 57.5
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 2.3e-100 369.8 317 61.8
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 2.3e-100 369.8 326 59.5
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 2.3e-100 369.8 336 58.3
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 1.5e-99 367.1 339 57.5
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 2.5e-99 366.3 334 58.1
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 2.8e-98 362.8 286 64.7
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 3.6e-98 362.5 331 57.7
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 1.2e-96 357.5 334 56.3
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 2.6e-96 356.3 328 59.1
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.3e-95 354.0 332 56.3
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.7e-95 353.6 335 57.0
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 6.4e-95 351.7 334 56.3
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 1.4e-94 350.5 345 55.4
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 2.4e-94 349.7 335 56.7
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 1.6e-93 347.1 324 54.0
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 4.6e-93 345.5 324 56.2
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 1.3e-92 344.0 359 51.8
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 5.1e-92 342.0 325 55.4
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 1.5e-91 340.5 275 60.4
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.9e-91 340.1 331 55.6
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 4.3e-91 339.0 344 50.3
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 7.4e-91 338.2 338 56.2
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 7.4e-91 338.2 356 53.4
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 1.2e-88 330.9 333 52.9
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 1.1e-86 324.3 328 52.4
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 2.5e-86 323.2 335 51.9
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 2.5e-86 323.2 331 53.2
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 3.2e-86 322.8 248 64.5
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 1.6e-85 320.5 327 52.3
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 2.1e-85 320.1 333 52.6
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 2.1e-85 320.1 324 51.2
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 1.0e-84 317.8 330 51.8
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.9e-84 315.8 329 51.4
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 2.5e-83 313.2 271 60.1
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 4.3e-83 312.4 352 47.7
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 4.8e-82 308.9 324 51.2
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 4.1e-81 305.8 359 48.7
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 4.1e-81 305.8 359 48.7
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 5.8e-80 302.0 216 68.5
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 2.5e-78 296.6 342 49.1
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.5e-75 287.3 301 53.8
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 6.3e-74 282.0 249 55.8
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 3.6e-69 266.2 337 44.5
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.8e-68 263.8 276 54.0
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 2.0e-64 250.4 387 41.6
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 7.7e-64 248.4 323 45.8
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 5.5e-62 242.3 199 61.3
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 2.7e-61 240.0 218 58.7
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.1e-59 234.6 293 47.1
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 3.1e-57 226.5 284 43.0
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.8e-52 210.7 310 38.7
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 7.7e-48 195.3 234 48.7
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.3e-47 194.5 332 39.2
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 1.2e-35 154.8 182 47.8
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 1.3e-34 151.4 147 58.5
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 4.9e-34 149.4 209 42.6
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 2.9e-26 123.6 83 68.7
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.9e-22 110.9 289 30.1
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 3.1e-20 103.6 90 57.8
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 2.6e-19 100.5 152 39.5
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 1.6e-13 81.3 65 56.9
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.7e-10 71.2 81 53.1
Atru.chr3.573 Acer truncatum HOM05D005677 ORTHO05D006966 3.0e-07 60.5 212 25.9
Cpa.g.sc1626.1 Carica papaya HOM05D006908 ORTHO05D008662 8.6e-07 58.9 34 73.5
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 1.9e-06 57.8 153 24.8
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 2.5e-06 57.4 215 27.9
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 2.5e-06 57.4 105 39.0
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 3.3e-06 57.0 208 27.9
Cpa.g.c43825 Carica papaya HOM05D006908 ORTHO05D008662 4.3e-06 56.6 34 79.4
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 5.6e-06 56.2 158 25.9
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 5.6e-06 56.2 150 28.7


User provided reference genes

Program Settings