Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 3.9e-139 498.4 312 100.0
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 4.3e-122 441.8 313 81.8
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.2e-105 386.3 311 73.0
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 6.1e-84 315.1 334 62.0
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.9e-77 293.5 220 74.1
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 2.5e-77 293.1 229 70.7
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 2.1e-76 290.0 237 69.6
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 4.9e-73 278.9 232 67.7
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.4e-72 277.3 227 69.6
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.8e-72 276.9 237 67.9
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.6e-71 273.9 229 67.2
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 2.0e-71 273.5 235 68.9
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 8.6e-70 268.1 235 67.7
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.1e-69 267.7 245 64.9
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 1.1e-69 267.7 239 65.7
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.9e-69 266.9 237 66.2
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 7.3e-69 265.0 233 64.8
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 9.5e-69 264.6 237 64.6
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 3.6e-68 262.7 234 65.4
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.4e-67 260.8 202 67.8
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.1e-67 259.6 237 65.8
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.0e-67 259.2 224 64.3
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 6.8e-67 258.5 231 65.8
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 6.8e-67 258.5 231 65.4
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.5e-66 257.3 237 65.4
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 2.6e-66 256.5 234 64.1
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 2.6e-66 256.5 194 72.7
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.4e-66 256.1 234 64.1
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 7.5e-66 255.0 226 64.2
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 7.5e-66 255.0 229 64.6
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 9.8e-66 254.6 231 64.9
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.3e-65 254.2 227 61.7
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.7e-65 253.8 231 64.5
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.7e-65 253.8 230 66.1
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 8.3e-65 251.5 228 62.3
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.1e-64 251.1 232 63.8
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 2.4e-64 250.0 224 63.8
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.4e-64 250.0 232 64.7
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 9.2e-64 248.1 255 59.6
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 1.2e-63 247.7 239 61.1
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 2.0e-63 246.9 228 65.8
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.7e-63 246.5 245 61.2
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 3.5e-63 246.1 237 61.6
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 3.5e-63 246.1 226 62.8
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.3e-62 244.2 311 51.8
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.1e-61 241.1 265 54.0
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-61 240.7 234 61.5
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.9e-61 240.4 229 61.6
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.5e-61 240.0 220 62.7
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 3.3e-61 239.6 234 60.3
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.3e-61 239.2 199 68.3
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 7.3e-61 238.4 206 64.6
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.1e-60 236.9 228 63.2
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 3.6e-60 236.1 226 61.9
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 1.4e-59 234.2 205 64.4
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.8e-59 233.8 231 58.4
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 2.3e-59 233.4 203 66.5
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.0e-59 232.6 234 60.7
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 2.6e-58 229.9 208 63.9
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 5.8e-58 228.8 218 58.7
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 2.2e-57 226.9 227 59.5
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 2.9e-57 226.5 234 59.4
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 4.9e-57 225.7 233 59.7
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 8.3e-57 224.9 231 58.0
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 3.2e-56 223.0 210 60.5
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 7.1e-56 221.9 228 60.1
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.6e-55 220.7 234 57.3
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 2.7e-55 219.9 223 57.8
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.3e-54 217.6 232 57.3
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 2.3e-54 216.9 237 56.1
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 6.6e-54 215.3 202 60.9
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 1.9e-53 213.8 218 58.7
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 9.5e-53 211.5 185 62.2
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.6e-52 210.7 228 53.5
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.6e-52 210.7 191 60.7
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 5.2e-51 205.7 191 58.6
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 5.2e-51 205.7 191 58.6
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 5.2e-51 205.7 191 58.6
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.0e-50 203.8 174 62.6
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 9.9e-50 201.4 228 55.7
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.8e-49 199.5 228 52.6
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 3.8e-49 199.5 244 52.9
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 6.4e-49 198.7 232 52.6
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.1e-48 198.0 229 55.9
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.9e-48 197.2 205 58.5
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.4e-48 196.8 230 53.0
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 2.4e-48 196.8 177 65.0
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 5.4e-48 195.7 213 56.3
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 5.4e-48 195.7 213 56.3
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.2e-47 194.5 196 58.2
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.6e-47 194.1 232 52.2
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.6e-47 194.1 232 52.2
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.6e-47 194.1 329 44.7
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.0e-46 191.4 234 51.7
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 2.3e-46 190.3 216 56.5
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 3.9e-46 189.5 218 53.7
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 6.6e-46 188.7 190 57.4
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 8.6e-46 188.3 232 51.7
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 8.6e-46 188.3 226 50.9
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 1.9e-45 187.2 187 56.7
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.9e-45 187.2 233 52.4
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 2.5e-45 186.8 210 55.2
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.5e-45 186.8 228 51.3
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 3.3e-45 186.4 148 70.3
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 9.6e-45 184.9 158 69.0
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 3.6e-44 183.0 233 49.8
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.8e-43 180.6 220 51.8
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 3.1e-43 179.9 231 48.9
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 5.2e-43 179.1 197 55.8
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 6.9e-43 178.7 231 48.5
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 8.9e-43 178.3 231 48.5
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 8.9e-43 178.3 147 65.3
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 8.9e-43 178.3 209 52.6
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.2e-41 173.7 202 51.0
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 3.8e-41 172.9 148 66.2
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 1.4e-40 171.0 152 64.5
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.4e-40 170.2 197 51.3
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 4.2e-40 169.5 218 49.5
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 4.2e-40 169.5 230 48.3
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 7.1e-40 168.7 120 73.3
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 7.1e-40 168.7 233 49.4
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 4.6e-39 166.0 225 47.1
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 3.0e-38 163.3 183 53.6
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 1.5e-34 151.0 192 52.1
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.4e-34 149.8 176 56.2
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.9e-34 148.3 173 55.5
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 4.9e-33 146.0 158 52.5
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 5.4e-32 142.5 132 58.3
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 6.0e-31 139.0 234 43.6
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 7.9e-31 138.7 148 54.7
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.3e-28 131.3 110 65.5
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 1.5e-26 124.4 111 62.2
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 6.2e-20 102.4 85 63.5
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 2.4e-19 100.5 107 54.2
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 5.3e-19 99.4 199 35.7
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 7.6e-18 95.5 202 35.1
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 1.7e-17 94.4 66 72.7
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.2e-16 89.7 103 55.3
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 3.0e-14 83.6 120 45.8
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 5.1e-14 82.8 125 40.0
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 5.7e-13 79.3 62 67.7
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 8.2e-12 75.5 131 35.1
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 7.6e-10 68.9 68 57.4
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 8.5e-09 65.5 183 29.0
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.5e-08 63.9 83 51.8
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.1e-07 60.8 124 37.1
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 2.7e-07 60.5 163 32.5
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.8e-06 57.8 198 29.3
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 8.7e-06 55.5 178 29.8


User provided reference genes

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