Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 7.1e-57 223.8 119 100.0
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 2.6e-43 178.7 119 82.4
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 5.8e-35 151.0 119 70.6
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.1e-33 146.7 119 68.1
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 1.9e-33 146.0 119 65.5
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.9e-33 146.0 119 66.4
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 2.5e-33 145.6 119 66.4
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.5e-33 145.6 119 66.4
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 2.5e-33 145.6 119 67.2
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 4.2e-33 144.8 117 65.8
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.2e-32 143.3 119 65.5
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-32 143.3 119 65.5
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.6e-32 142.9 119 70.6
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.1e-32 142.5 116 67.2
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 2.1e-32 142.5 116 67.2
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 3.5e-32 141.7 119 65.5
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.5e-32 141.7 116 66.4
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 3.5e-32 141.7 129 62.8
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 3.5e-32 141.7 119 65.5
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.6e-32 141.4 119 66.4
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 6.0e-32 141.0 119 68.1
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 1.0e-31 140.2 118 62.7
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.0e-31 140.2 119 64.7
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.3e-31 139.8 117 65.0
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.8e-31 139.4 117 64.1
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 2.3e-31 139.0 119 63.9
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 3.9e-31 138.3 120 63.3
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 5.1e-31 137.9 120 63.3
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 5.1e-31 137.9 119 63.9
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 8.7e-31 137.1 118 61.0
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.1e-30 136.7 127 66.1
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.1e-30 136.7 125 60.8
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.5e-30 135.6 120 62.5
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 3.3e-30 135.2 116 59.5
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 4.3e-30 134.8 120 63.3
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 4.3e-30 134.8 120 61.7
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 7.4e-30 134.0 127 59.8
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.3e-29 133.3 119 63.0
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 2.8e-29 132.1 119 61.3
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 4.8e-29 131.3 116 60.3
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 4.8e-29 131.3 120 61.7
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 4.8e-29 131.3 116 58.6
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 4.8e-29 131.3 116 59.5
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.8e-29 131.3 119 61.3
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 8.2e-29 130.6 120 60.0
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 8.2e-29 130.6 119 59.7
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 8.2e-29 130.6 116 58.6
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.1e-28 130.2 116 57.8
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.4e-28 129.8 119 58.8
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 4.1e-28 128.3 118 58.5
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.1e-28 128.3 120 62.5
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 6.9e-28 127.5 118 58.5
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 6.9e-28 127.5 118 59.3
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 9.0e-28 127.1 119 57.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 9.0e-28 127.1 118 57.6
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 9.0e-28 127.1 102 66.7
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 9.0e-28 127.1 119 59.7
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.2e-27 126.7 120 60.8
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.5e-27 126.3 116 59.5
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.5e-27 126.3 107 65.4
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 2.0e-27 125.9 121 59.5
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 2.6e-27 125.6 119 56.3
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 2.6e-27 125.6 119 55.5
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.6e-27 125.6 120 59.2
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 3.4e-27 125.2 119 56.3
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 4.5e-27 124.8 116 58.6
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 4.5e-27 124.8 116 58.6
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 5.8e-27 124.4 120 59.2
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 5.8e-27 124.4 119 57.1
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 5.8e-27 124.4 106 67.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 7.6e-27 124.0 120 59.2
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 7.6e-27 124.0 119 55.5
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 7.6e-27 124.0 105 66.7
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 7.6e-27 124.0 121 57.9
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.3e-26 123.2 106 66.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.7e-26 122.9 119 57.1
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.2e-26 122.5 119 55.5
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 2.2e-26 122.5 119 56.3
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 2.2e-26 122.5 119 56.3
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 2.2e-26 122.5 119 56.3
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 2.9e-26 122.1 119 55.5
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 2.9e-26 122.1 119 55.5
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.9e-26 122.1 119 56.3
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.9e-26 122.1 119 57.1
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 3.8e-26 121.7 97 67.0
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.0e-26 121.3 120 57.5
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 5.0e-26 121.3 116 57.8
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 6.5e-26 120.9 119 55.5
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 8.4e-26 120.6 116 56.9
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 8.4e-26 120.6 119 56.3
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 8.4e-26 120.6 119 53.8
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 1.4e-25 119.8 100 62.0
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 2.5e-25 119.0 120 58.3
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 2.5e-25 119.0 120 58.3
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 3.2e-25 118.6 115 55.7
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 4.2e-25 118.2 120 55.8
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 5.5e-25 117.9 112 55.4
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 7.2e-25 117.5 119 56.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 9.3e-25 117.1 120 54.2
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 9.3e-25 117.1 116 56.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 9.3e-25 117.1 116 56.0
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 1.2e-24 116.7 120 55.8
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 2.7e-24 115.5 106 61.3
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 3.5e-24 115.2 116 56.0
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 4.6e-24 114.8 120 53.3
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 4.6e-24 114.8 120 57.5
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 4.6e-24 114.8 99 62.6
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 7.9e-24 114.0 106 54.7
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 7.9e-24 114.0 119 56.3
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.0e-23 113.6 101 60.4
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.3e-23 113.2 103 60.2
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.0e-23 112.1 107 57.0
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 6.7e-23 110.9 120 54.2
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.9e-22 109.4 119 52.9
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 2.5e-22 109.0 117 53.0
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 3.3e-22 108.6 120 53.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 4.3e-22 108.2 77 72.7
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 5.7e-22 107.8 102 56.9
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 5.7e-22 107.8 120 53.3
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.3e-21 106.7 75 74.7
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 8.2e-21 104.0 103 51.5
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.4e-20 102.4 118 51.7
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 4.1e-20 101.7 102 53.9
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 4.1e-20 101.7 119 46.2
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 5.3e-20 101.3 118 50.8
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 5.3e-20 101.3 103 54.4
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 2.0e-19 99.4 121 50.4
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 7.7e-19 97.4 75 73.3
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.3e-18 96.7 100 55.0
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 5.0e-18 94.7 119 44.5
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.9e-17 92.8 121 48.8
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.5e-17 92.4 96 52.1
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.2e-16 90.1 74 66.2
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.7e-16 89.0 72 62.5
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 2.7e-16 89.0 74 62.2
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.9e-16 87.4 76 68.4
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.4e-15 86.7 60 73.3
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.9e-15 85.1 78 61.5
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 7.4e-14 80.9 58 67.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 2.8e-13 79.0 112 43.8
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.8e-13 79.0 71 56.3
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 8.2e-13 77.4 109 43.1
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 9.1e-12 73.9 96 43.8
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.2e-09 65.5 53 69.8
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 5.5e-09 64.7 79 50.6
Solyc11g065610.1 Solanum lycopersicum HOM05D005271 ORTHO05D006072 8.8e-07 57.4 35 71.4
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 1.1e-06 57.0 80 43.8
FAN19G2356 Fragaria x ananassa HOM05D029494 ORTHO05D035663 1.5e-06 56.6 42 69.0


User provided reference genes

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