Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 4.7e-76 287.7 140 100.0
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.1e-61 240.0 141 85.8
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 6.4e-49 197.6 138 72.5
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 8.6e-46 187.2 140 65.7
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 1.7e-41 172.9 141 63.1
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.1e-40 170.2 110 79.1
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 6.6e-38 161.0 131 57.3
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 1.1e-35 153.7 129 55.8
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.5e-34 149.8 141 52.5
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.5e-34 149.8 139 51.8
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 2.0e-34 149.4 146 50.7
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 2.6e-34 149.1 138 55.1
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 3.4e-34 148.7 140 55.7
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.4e-33 144.4 129 54.3
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 8.4e-33 144.1 140 52.9
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 1.9e-32 142.9 140 53.6
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 4.2e-32 141.7 142 52.1
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 4.2e-32 141.7 129 52.7
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.1e-31 139.4 139 51.1
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.8e-30 136.3 140 48.6
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 2.3e-30 136.0 143 51.0
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 3.0e-30 135.6 139 52.5
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 3.9e-30 135.2 140 50.7
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.1e-29 133.7 115 57.4
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 5.6e-29 131.3 88 64.8
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 2.8e-28 129.0 138 50.7
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 1.8e-27 126.3 138 47.8
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 4.0e-27 125.2 130 50.0
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.6e-26 122.5 130 48.5
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.6e-26 122.5 130 49.2
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 2.6e-26 122.5 110 50.9
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.7e-25 119.8 139 49.6
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.9e-25 119.0 117 51.3
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 2.9e-25 119.0 139 48.2
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 4.9e-25 118.2 139 48.2
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 9.3e-24 114.0 142 45.8
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 2.1e-23 112.8 144 48.6
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.1e-23 112.8 120 50.0
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.1e-23 112.8 117 47.9
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.1e-23 112.8 117 47.9
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.5e-23 112.1 138 47.1
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 1.0e-22 110.5 138 43.5
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.3e-22 110.2 120 48.3
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.8e-22 109.8 132 44.7
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 1.8e-22 109.8 124 49.2
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.0e-22 109.0 137 47.4
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.9e-22 108.6 138 41.3
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 4.3e-21 105.1 140 42.9
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 4.3e-21 105.1 138 44.9
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 5.6e-21 104.8 142 43.0
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.6e-21 104.8 142 43.0
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.6e-21 104.8 142 43.0
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 5.6e-21 104.8 141 43.3
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 7.4e-21 104.4 140 42.9
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 9.6e-21 104.0 137 43.8
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.3e-20 103.6 114 49.1
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.3e-20 103.6 136 44.9
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.1e-20 102.8 142 42.3
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.1e-20 102.8 142 42.3
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 6.2e-20 101.3 147 42.9
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 1.4e-19 100.1 147 42.2
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.8e-19 99.8 140 42.9
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 1.8e-19 99.8 115 44.3
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 5.3e-19 98.2 117 51.3
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.3e-19 98.2 142 41.5
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 6.9e-19 97.8 118 50.8
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.2e-18 97.1 139 37.4
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 1.5e-18 96.7 149 38.9
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 4.5e-18 95.1 134 42.5
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 5.8e-18 94.7 147 42.2
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 1.7e-17 93.2 110 47.3
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 1.7e-17 93.2 123 47.2
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 8.4e-17 90.9 90 48.9
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 8.4e-17 90.9 132 39.4
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.4e-16 90.1 138 40.6
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 1.4e-16 90.1 119 42.0
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 1.9e-16 89.7 132 37.9
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 9.3e-16 87.4 111 45.0
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.2e-15 87.0 91 51.6
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.6e-15 86.7 85 49.4
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 2.1e-15 86.3 138 41.3
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 4.6e-15 85.1 133 36.8
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 4.6e-15 85.1 124 41.1
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 1.8e-14 83.2 116 39.7
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 2.3e-14 82.8 94 47.9
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.3e-14 82.8 97 43.3
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.3e-14 82.8 97 43.3
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 3.0e-14 82.4 138 38.4
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 3.9e-14 82.0 119 42.9
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 3.9e-14 82.0 102 45.1
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 5.1e-14 81.6 149 38.9
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 5.1e-14 81.6 86 46.5
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 5.1e-14 81.6 106 44.3
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 6.7e-14 81.3 101 42.6
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 6.7e-14 81.3 125 39.2
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 8.7e-14 80.9 99 45.5
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 1.5e-13 80.1 93 49.5
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.9e-13 79.7 112 40.2
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.5e-13 79.3 128 39.1
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 5.7e-13 78.2 113 37.2
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 2.8e-12 75.9 127 34.6
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 1.4e-11 73.6 134 35.1
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 1.4e-11 73.6 119 33.6
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 1.8e-11 73.2 97 43.3
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 2.4e-11 72.8 75 49.3
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.4e-11 72.8 59 59.3
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.4e-11 72.8 69 49.3
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 4.1e-11 72.0 127 36.2
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 5.3e-11 71.6 119 32.8
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 5.3e-11 71.6 69 55.1
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 5.3e-11 71.6 60 53.3
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 5.3e-11 71.6 69 55.1
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 6.9e-11 71.2 60 51.7
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.2e-10 70.5 85 41.2
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 7.6e-10 67.8 92 40.2
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.0e-09 67.4 86 40.7
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 1.0e-09 67.4 103 34.0
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 2.2e-09 66.2 83 39.8
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 2.2e-09 66.2 116 33.6
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 2.2e-09 66.2 86 40.7
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 2.9e-09 65.9 85 40.0
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 3.8e-09 65.5 86 40.7
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 1.1e-08 63.9 60 46.7
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 1.1e-08 63.9 87 44.8
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 1.1e-08 63.9 116 33.6
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 1.1e-08 63.9 81 43.2
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 1.4e-08 63.5 116 32.8
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 1.4e-08 63.5 116 32.8
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.9e-08 63.2 141 40.4
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 4.2e-08 62.0 71 43.7
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 4.2e-08 62.0 71 43.7
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 4.2e-08 62.0 71 43.7
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 4.2e-08 62.0 95 42.1
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 5.5e-08 61.6 132 35.6
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 7.2e-08 61.2 96 41.7
SEGI_01582 Sequoiadendron giganteum HOM05D055431 ORTHO05D005760 1.6e-07 60.1 86 33.7
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.1e-07 59.7 48 58.3
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 2.1e-07 59.7 66 45.5
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.7e-07 59.3 47 51.1
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.0e-06 57.4 106 34.9
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 1.8e-06 56.6 70 41.4
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 5.1e-06 55.1 54 50.0
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 8.7e-06 54.3 51 45.1


User provided reference genes

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