Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 3.2e-171 605.1 336 100.0
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 1.1e-150 537.0 333 90.4
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 2.7e-117 426.0 324 75.3
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 1.1e-110 404.1 315 71.7
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 2.1e-106 389.8 314 71.0
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 3.6e-106 389.0 308 73.1
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 1.5e-104 383.6 312 71.5
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 9.8e-104 380.9 312 71.5
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 9.8e-104 380.9 311 71.4
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 2.2e-103 379.8 322 70.5
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 4.9e-103 378.6 319 70.2
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 1.4e-102 377.1 316 69.0
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 1.8e-102 376.7 311 71.1
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 3.1e-102 375.9 315 67.0
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.4e-102 375.2 317 69.4
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 2.0e-101 373.2 323 67.2
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 2.0e-101 373.2 327 66.4
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 4.5e-101 372.1 320 69.4
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 7.8e-101 371.3 327 66.7
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 2.9e-100 369.4 326 67.5
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.9e-100 369.4 320 68.4
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 5.0e-100 368.6 316 68.0
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 6.6e-100 368.2 314 67.8
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 1.1e-99 367.5 326 67.8
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.1e-99 367.5 329 66.6
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 7.3e-99 364.8 312 68.3
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 1.6e-98 363.6 340 63.2
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 3.6e-98 362.5 321 61.4
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 3.6e-98 362.5 320 66.6
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 6.1e-98 361.7 333 65.8
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 1.0e-97 360.9 334 65.0
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 8.9e-97 357.8 317 65.6
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 1.5e-96 357.1 329 65.3
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 4.4e-96 355.5 306 67.3
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 7.5e-96 354.8 308 67.5
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 7.5e-96 354.8 338 63.9
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 1.3e-95 354.0 313 67.7
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.2e-95 353.2 319 64.9
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 2.9e-95 352.8 333 64.9
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 3.7e-95 352.4 318 66.0
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 4.9e-95 352.1 309 61.2
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 4.9e-95 352.1 312 64.1
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 6.4e-95 351.7 312 60.3
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 6.4e-95 351.7 323 65.9
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 1.1e-94 350.9 320 67.2
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 1.4e-94 350.5 306 67.0
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 1.4e-94 350.5 324 64.2
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 3.2e-94 349.4 309 60.8
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 3.2e-94 349.4 323 62.5
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 3.2e-94 349.4 323 62.5
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 5.4e-94 348.6 345 63.2
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 7.0e-94 348.2 327 66.7
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 9.2e-94 347.8 311 58.8
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 1.2e-93 347.4 318 66.0
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 4.6e-93 345.5 309 67.6
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 2.3e-92 343.2 309 61.2
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 3.0e-92 342.8 318 63.8
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 3.0e-92 342.8 318 63.8
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 3.9e-92 342.4 329 62.3
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 8.6e-92 341.3 309 66.7
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 1.9e-91 340.1 305 65.2
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 2.5e-91 339.7 312 63.5
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 4.3e-91 339.0 324 57.1
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 1.2e-90 337.4 317 58.4
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 3.6e-90 335.9 316 61.7
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 8.0e-90 334.7 318 63.2
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 1.2e-88 330.9 316 60.1
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 4.4e-88 328.9 311 63.3
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 5.8e-88 328.6 313 61.3
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 2.9e-87 326.2 323 62.2
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 1.9e-86 323.6 329 61.7
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 7.0e-86 321.6 335 57.3
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.1e-85 320.1 309 58.3
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 2.7e-85 319.7 334 60.8
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 4.6e-85 318.9 323 58.5
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.3e-84 317.4 333 58.0
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 3.9e-84 315.8 319 60.8
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.2e-82 310.8 286 62.2
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 2.1e-82 310.1 317 59.6
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 2.3e-81 306.6 260 67.7
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 3.1e-81 306.2 315 54.0
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 3.1e-81 306.2 315 54.0
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 2.6e-80 303.1 395 46.8
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 4.4e-80 302.4 362 55.5
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 7.5e-80 301.6 337 58.2
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 2.7e-77 293.1 194 74.2
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 3.5e-77 292.7 201 73.6
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 1.0e-76 291.2 196 75.0
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 2.5e-75 286.6 309 59.2
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 1.6e-74 283.9 305 58.7
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 4.4e-72 275.8 311 55.6
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 7.6e-72 275.0 316 50.3
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 9.9e-72 274.6 185 73.0
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 9.9e-72 274.6 185 73.0
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 9.9e-72 274.6 259 64.5
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 9.9e-72 274.6 321 51.4
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 1.7e-71 273.9 323 51.4
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 9.2e-70 268.1 272 60.7
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 4.6e-69 265.8 258 56.6
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 1.3e-68 264.2 334 52.7
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 3.9e-60 236.1 219 63.9
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 6.6e-60 235.3 329 48.3
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 6.9e-57 225.3 191 54.5
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.2e-56 224.6 242 59.1
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 1.7e-55 220.7 157 69.4
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 4.0e-49 199.5 143 69.2
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 4.5e-48 196.1 202 53.0
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 4.9e-47 192.6 309 42.1
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 8.7e-44 181.8 155 61.9
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 2.8e-42 176.8 311 40.5
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 9.3e-38 161.8 414 32.4
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.6e-32 143.7 154 63.6
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 2.3e-28 130.6 125 57.6
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 2.2e-23 114.0 361 27.7
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 8.5e-23 112.1 187 39.0
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.1e-22 111.7 69 75.4
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 6.7e-20 102.4 71 70.4
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 6.3e-18 95.9 137 43.8
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 4.1e-17 93.2 78 67.9
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 1.2e-16 91.7 148 40.5
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 1.1e-14 85.1 145 38.6
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 1.1e-14 85.1 52 78.8
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 3.2e-14 83.6 53 67.9
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 4.7e-13 79.7 48 79.2
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.1e-11 75.1 85 55.3
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 1.5e-11 74.7 51 70.6
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 4.1e-09 66.6 70 55.7
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 1.6e-08 64.7 44 75.0
Ah.07g199910 Amaranthus hybridus HOM05D006103 ORTHO05D007468 1.5e-06 58.2 64 51.6
RcHm_v2.0_Chr6g0308841 Rosa chinensis HOM05D006103 ORTHO05D007468 3.2e-06 57.0 30 83.3


User provided reference genes

Program Settings