Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 5.0e-151 537.7 267 100.0
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.3e-70 269.2 267 57.7
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.0e-63 247.7 271 55.4
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.6e-56 223.8 267 50.9
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 4.5e-43 179.1 269 40.1
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.4e-41 174.1 267 40.8
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 5.5e-41 172.2 264 42.0
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 7.9e-40 168.3 271 39.9
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 3.9e-39 166.0 274 40.1
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.1e-38 164.5 267 39.0
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 5.7e-38 162.2 269 38.7
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 9.7e-38 161.4 269 38.3
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 4.8e-37 159.1 267 38.2
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 6.3e-37 158.7 267 39.3
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.1e-36 157.9 267 37.8
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.4e-36 157.5 268 39.2
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 1.4e-36 157.5 268 39.2
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.4e-36 156.8 268 39.2
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 7.7e-35 151.8 267 37.8
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 3.2e-33 146.4 267 38.2
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.2e-33 146.0 269 36.1
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 4.2e-33 146.0 261 36.0
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.1e-32 143.7 269 36.8
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.1e-32 143.7 269 36.8
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 2.1e-32 143.7 268 36.2
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 2.1e-32 143.7 265 39.2
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 7.9e-32 141.7 267 35.2
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.4e-31 141.0 268 38.4
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.0e-31 139.8 267 35.6
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.1e-30 137.9 270 33.3
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.0e-30 137.1 267 35.6
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.6e-30 136.7 264 34.1
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 7.4e-30 135.2 267 35.2
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.3e-29 134.4 269 35.7
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 1.7e-29 134.0 268 33.6
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 1.7e-29 134.0 264 33.3
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 6.3e-29 132.1 269 34.9
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.1e-28 131.3 267 32.6
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 1.1e-28 131.3 267 33.0
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-28 130.6 263 33.1
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.8e-28 130.6 270 33.0
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 2.4e-28 130.2 267 34.1
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 4.1e-28 129.4 269 34.2
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 4.1e-28 129.4 267 34.5
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 5.3e-28 129.0 263 33.1
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 5.3e-28 129.0 266 34.2
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 7.0e-28 128.6 267 31.8
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 7.0e-28 128.6 270 32.2
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 9.1e-28 128.3 267 32.6
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 9.1e-28 128.3 273 33.3
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.2e-27 127.9 267 34.8
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.6e-27 127.5 263 32.7
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 2.0e-27 127.1 267 31.8
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.6e-27 126.7 270 32.2
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.5e-27 126.3 267 34.1
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 5.9e-27 125.6 263 32.3
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.0e-26 124.8 267 34.1
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.3e-26 124.4 264 32.2
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.7e-26 124.0 276 33.7
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.7e-26 124.0 267 34.1
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.2e-26 123.6 79 70.9
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 2.9e-26 123.2 263 31.9
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 2.9e-26 123.2 267 35.2
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 3.8e-26 122.9 273 34.1
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.8e-26 122.9 267 33.3
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.8e-26 122.9 84 65.5
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 3.8e-26 122.9 261 34.1
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 6.5e-26 122.1 268 32.5
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.5e-25 120.9 267 33.7
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.9e-25 120.6 267 32.2
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.9e-25 120.6 267 32.2
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 7.2e-25 118.6 270 33.0
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.2e-24 117.9 267 32.6
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.7e-24 116.7 267 31.5
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.6e-24 116.3 264 31.1
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 4.7e-24 115.9 273 33.0
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 4.7e-24 115.9 268 32.5
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 4.7e-24 115.9 267 31.8
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.4e-23 114.4 265 30.6
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 1.4e-23 114.4 267 31.8
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 1.8e-23 114.0 270 32.6
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 2.3e-23 113.6 270 32.6
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 2.3e-23 113.6 267 30.3
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 2.3e-23 113.6 264 31.1
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 8.8e-23 111.7 264 31.4
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.0e-22 110.5 267 30.0
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 2.0e-22 110.5 268 31.7
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.6e-22 110.2 268 31.3
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 2.6e-22 110.2 267 32.6
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 2.6e-22 110.2 262 31.7
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.6e-22 110.2 267 30.7
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 9.7e-22 108.2 268 30.6
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 3.7e-21 106.3 80 63.8
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 3.7e-21 106.3 221 32.6
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 6.3e-21 105.5 100 58.0
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 8.2e-21 105.1 267 30.0
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 1.1e-20 104.8 81 59.3
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.4e-20 104.4 268 31.0
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.8e-20 104.0 79 60.8
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.8e-20 104.0 300 30.0
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 7.0e-20 102.1 267 29.6
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.2e-19 101.3 80 60.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 3.5e-19 99.8 301 29.2
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 3.5e-19 99.8 264 31.8
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.5e-19 99.4 263 28.9
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.5e-19 99.4 80 60.0
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 4.5e-19 99.4 271 29.2
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 7.7e-19 98.6 267 30.7
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.7e-18 97.4 267 30.0
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.2e-18 97.1 254 29.5
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 2.2e-18 97.1 274 29.9
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 2.9e-18 96.7 267 29.2
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 3.8e-18 96.3 253 32.4
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.8e-18 96.3 79 58.2
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.8e-18 96.3 79 58.2
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 5.0e-18 95.9 72 63.9
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 6.5e-18 95.5 259 31.3
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.1e-17 94.7 80 57.5
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.5e-17 94.4 88 61.4
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 2.5e-17 93.6 81 55.6
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 3.2e-17 93.2 89 56.2
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.6e-16 90.9 77 54.5
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 2.1e-16 90.5 267 28.1
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.8e-15 87.4 261 29.5
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 2.3e-15 87.0 260 28.8
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 2.3e-15 87.0 260 29.6
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 5.2e-15 85.9 260 28.8
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 6.8e-15 85.5 254 29.9
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 8.8e-15 85.1 269 27.9
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.2e-14 84.7 262 26.0
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.0e-14 84.0 259 27.8
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.0e-14 84.0 259 27.8
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.6e-14 83.6 262 28.6
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 2.6e-14 83.6 254 28.7
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 3.4e-14 83.2 265 26.8
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 5.7e-14 82.4 254 28.7
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 5.7e-14 82.4 254 28.7
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 5.7e-14 82.4 51 76.5
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 5.7e-14 82.4 259 28.6
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 5.7e-14 82.4 107 40.2
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.3e-13 81.3 254 28.7
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.7e-13 80.9 259 27.4
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.2e-13 80.5 81 50.6
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 8.3e-13 78.6 89 49.4
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.1e-12 78.2 81 45.7
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 5.4e-12 75.9 272 25.4
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 1.6e-11 74.3 88 46.6
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.5e-11 73.2 89 50.6
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 1.7e-10 70.9 254 27.2
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 2.2e-10 70.5 79 45.6
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.9e-10 70.1 263 28.1
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 6.5e-10 68.9 223 27.8
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 2.7e-08 63.5 77 44.2
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.6e-08 63.2 94 36.2
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 1.0e-07 61.6 76 44.7
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-06 58.2 45 57.8


User provided reference genes

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