Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 3.9e-218 761.1 376 100.0
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.1e-127 460.7 378 66.4
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 5.6e-100 368.6 408 54.7
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 4.9e-88 328.9 377 50.4
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.7e-83 312.8 305 53.4
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.5e-79 300.1 304 52.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 4.2e-79 299.3 375 47.2
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 2.7e-78 296.6 290 54.1
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.9e-77 292.7 380 45.3
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 9.7e-76 288.1 312 49.4
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.2e-75 287.0 288 52.4
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.4e-74 283.5 300 51.3
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.2e-73 281.2 290 53.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.5e-73 280.8 298 52.3
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 2.0e-73 280.4 379 45.6
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 5.9e-73 278.9 280 53.6
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.4e-71 274.2 289 51.9
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 9.4e-71 271.6 281 53.0
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.2e-70 271.2 302 49.3
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 7.9e-70 268.5 297 48.5
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 5.1e-69 265.8 373 42.9
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.1e-69 265.8 373 42.9
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 6.7e-69 265.4 282 49.6
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.5e-68 263.5 373 42.6
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.7e-68 261.5 318 47.2
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.2e-67 258.5 363 41.9
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.2e-67 258.5 363 41.9
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 3.1e-66 256.5 280 48.2
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.1e-66 256.5 289 48.4
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.5e-65 252.7 268 50.0
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 5.9e-65 252.3 294 48.6
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 7.7e-65 251.9 286 49.3
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.0e-64 251.5 279 49.5
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.3e-64 251.1 240 55.4
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.7e-64 250.8 294 46.9
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 2.5e-63 246.9 277 48.7
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 7.2e-63 245.4 284 50.4
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 9.4e-63 245.0 291 48.1
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.2e-62 244.6 300 47.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.2e-62 244.6 300 47.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.2e-62 244.6 300 47.0
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 7.9e-62 241.9 272 48.5
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 7.9e-62 241.9 297 47.1
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.0e-61 241.5 272 48.5
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.8e-61 240.7 272 48.5
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 3.0e-61 240.0 307 45.3
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.5e-60 237.7 295 46.4
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.5e-60 237.7 285 44.9
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 2.0e-60 237.3 295 46.4
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 2.0e-60 237.3 295 46.4
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 7.4e-60 235.3 302 46.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 1.3e-59 234.6 311 44.7
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 2.8e-59 233.4 296 44.6
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 4.8e-59 232.6 250 50.8
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 6.3e-59 232.3 300 46.7
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.4e-58 231.1 300 46.3
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.8e-58 230.7 277 45.5
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 2.4e-58 230.3 297 46.1
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 7.0e-58 228.8 269 48.3
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 2.6e-57 226.9 280 45.0
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.5e-57 226.5 276 46.7
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 3.5e-57 226.5 268 46.3
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 7.7e-57 225.3 267 45.3
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 1.0e-56 224.9 263 47.5
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.7e-56 224.2 234 50.4
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 2.9e-56 223.4 279 45.5
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 3.2e-55 219.9 281 41.3
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 7.2e-55 218.8 267 46.8
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.2e-54 218.0 296 42.2
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.2e-54 218.0 302 44.7
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 1.2e-54 218.0 300 44.0
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 8.0e-54 215.3 290 43.1
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.0e-53 214.9 298 42.6
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 1.4e-53 214.5 296 41.6
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.8e-53 214.2 277 41.9
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 5.2e-53 212.6 287 44.6
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.1e-52 211.5 267 46.4
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 2.0e-52 210.7 279 41.6
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.5e-52 208.8 267 46.4
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 9.7e-52 208.4 267 44.2
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.7e-51 207.6 280 43.2
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 3.7e-51 206.5 260 45.4
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.8e-50 204.1 280 44.6
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.8e-50 204.1 271 45.0
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 4.1e-50 203.0 300 43.0
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.1e-50 201.8 268 45.5
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-49 200.3 271 45.0
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-49 199.5 262 45.8
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.9e-49 199.1 260 45.4
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 5.9e-49 199.1 319 41.7
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 2.2e-48 197.2 280 45.0
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-48 197.2 262 45.4
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-48 197.2 262 45.4
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 2.9e-48 196.8 316 40.8
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.9e-48 196.8 294 40.8
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.9e-48 196.8 279 44.1
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-48 196.8 262 45.0
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-48 196.4 262 45.0
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-48 196.4 262 45.0
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-48 196.4 262 45.0
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 5.0e-48 196.1 286 46.5
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.5e-48 195.3 262 45.0
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-47 194.9 262 45.0
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 3.2e-47 193.4 283 42.8
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 4.7e-46 189.5 207 50.7
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 4.7e-46 189.5 299 42.5
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 6.1e-46 189.1 296 42.9
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.4e-45 188.0 309 40.8
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 4.0e-45 186.4 308 39.6
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 4.0e-45 186.4 308 39.6
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 6.8e-45 185.7 276 42.4
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 2.2e-43 180.6 313 39.3
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 2.2e-43 180.6 313 39.3
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.2e-43 180.6 182 56.0
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 6.3e-43 179.1 313 39.0
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-42 177.9 249 44.6
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.4e-42 177.9 213 47.4
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.5e-39 167.2 284 39.4
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-39 167.2 206 48.5
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 7.2e-39 165.6 278 39.2
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 9.4e-39 165.2 158 57.0
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 3.6e-38 163.3 261 39.5
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.0e-37 161.8 261 41.0
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 4.0e-37 159.8 261 39.1
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.8e-37 158.7 233 42.5
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.5e-36 157.9 280 37.9
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.7e-36 156.0 165 52.1
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 7.5e-36 155.6 288 35.4
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 7.5e-36 155.6 231 39.0
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-34 151.8 163 52.1
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 5.4e-34 149.4 256 39.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.6e-33 147.9 208 40.9
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.4e-26 124.0 128 53.9
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.3e-24 117.5 158 45.6
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-24 116.7 180 41.7
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 3.6e-22 110.2 185 38.9
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-20 104.0 154 42.2
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.1e-18 98.6 220 33.2
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 4.1e-18 96.7 101 50.5
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 4.1e-18 96.7 214 31.8
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 6.8e-13 79.3 213 27.7
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 2.0e-12 77.8 93 41.9
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.0e-08 65.5 66 48.5
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-08 63.9 103 37.9
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 5.6e-07 59.7 171 28.7
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-06 57.8 83 39.8


User provided reference genes

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