Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 0.0e+00 1096.3 575 100.0
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 2.6e-261 905.2 570 85.4
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.3e-233 813.1 570 77.4
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 7.2e-139 498.4 571 52.5
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.3e-124 451.1 604 46.2
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 1.7e-124 450.7 525 50.5
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 4.2e-123 446.0 615 48.5
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 1.7e-119 434.1 586 47.4
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 2.7e-117 426.8 583 48.9
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 1.6e-114 417.5 578 46.7
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 6.1e-114 415.6 583 45.5
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 6.8e-113 412.1 553 47.0
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.5e-112 411.0 576 44.8
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 2.9e-111 406.8 576 45.0
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 6.4e-111 405.6 582 44.5
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 2.4e-110 403.7 540 47.0
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 5.4e-110 402.5 578 43.6
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 5.4e-110 402.5 571 45.9
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 7.0e-110 402.1 582 44.5
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.6e-109 401.0 576 44.3
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 1.9e-107 394.0 576 45.0
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 2.5e-107 393.7 576 43.4
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 4.0e-105 386.3 564 46.8
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 1.6e-101 374.4 593 42.8
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 6.0e-101 372.5 577 42.8
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 1.1e-99 368.2 576 39.2
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 1.1e-99 368.2 578 41.9
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.1e-97 361.7 541 42.5
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 8.9e-97 358.6 570 41.4
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 1.3e-95 354.8 567 40.7
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 1.3e-95 354.8 567 40.7
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 2.9e-95 353.6 545 40.6
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 3.7e-95 353.2 552 41.8
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 1.1e-94 351.7 651 37.8
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 5.4e-94 349.4 525 44.2
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 7.1e-94 349.0 574 41.1
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 1.6e-93 347.8 565 41.1
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 1.3e-92 344.7 529 40.6
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 5.1e-92 342.8 579 39.7
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 3.6e-90 336.7 573 41.0
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 4.0e-89 333.2 736 35.1
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 1.7e-87 327.8 575 40.5
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 3.7e-87 326.6 573 40.0
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.4e-86 324.7 547 39.1
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 1.6e-85 321.2 577 39.3
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 3.5e-85 320.1 573 38.6
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.2e-82 311.6 546 39.2
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 3.6e-82 310.1 519 41.4
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 1.1e-81 308.5 315 58.4
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 5.2e-81 306.2 568 37.9
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 9.9e-80 302.0 537 39.5
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 9.9e-80 302.0 537 39.5
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 4.9e-79 299.7 564 37.4
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 8.4e-79 298.9 538 38.5
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 8.4e-79 298.9 534 39.9
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 8.4e-79 298.9 534 39.9
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 8.4e-79 298.9 534 39.9
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 8.4e-79 298.9 350 51.1
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 1.9e-78 297.7 512 38.9
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 3.2e-78 297.0 528 39.2
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.6e-77 294.7 569 36.4
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 1.0e-76 292.0 550 38.4
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 3.0e-76 290.4 554 37.5
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 3.9e-76 290.0 544 36.9
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 5.1e-76 289.7 554 37.7
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.9e-75 287.7 577 36.4
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 9.6e-75 285.4 509 38.1
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 1.3e-74 285.0 591 36.7
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 4.8e-74 283.1 509 37.7
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 2.4e-73 280.8 549 36.6
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 2.6e-72 277.3 636 34.3
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 3.4e-72 276.9 538 36.2
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 4.5e-72 276.6 514 39.3
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 1.3e-71 275.0 545 35.8
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 2.7e-69 267.3 540 36.9
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 3.9e-68 263.5 534 35.6
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 1.1e-67 261.9 538 35.7
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 1.1e-67 261.9 534 36.1
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 9.0e-65 252.3 542 34.9
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 9.9e-64 248.8 539 34.5
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 1.1e-62 245.4 591 35.2
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 5.5e-62 243.0 567 32.3
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 3.1e-57 227.3 509 36.0
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 5.8e-56 223.0 277 47.3
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 4.6e-53 213.4 567 30.3
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 4.3e-51 206.8 547 31.8
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 1.3e-50 205.3 563 31.3
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 3.1e-49 200.7 227 50.7
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 5.3e-49 199.9 382 37.4
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 3.4e-48 197.2 273 43.2
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 4.2e-46 190.3 540 29.8
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 5.1e-36 156.8 160 58.8
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 2.6e-32 144.4 351 33.3
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 2.5e-30 137.9 558 26.7
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 3.2e-30 137.5 572 26.6
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 6.7e-28 129.8 162 47.5
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 1.1e-27 129.0 297 32.7
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 9.7e-27 125.9 164 50.6
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 9.7e-27 125.9 540 26.7
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 1.3e-23 115.5 241 36.5
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 9.4e-22 109.4 114 57.0
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 2.1e-21 108.2 155 45.8
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 3.7e-18 97.4 149 40.3
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.4e-17 95.5 133 49.6
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 1.6e-16 92.0 139 42.4
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 2.9e-15 87.8 89 50.6
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.9e-15 87.8 142 35.2
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 3.2e-14 84.3 198 30.8
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 4.8e-10 70.5 614 20.8
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 1.9e-06 58.5 272 22.4


User provided reference genes

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