Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 6.4e-157 557.4 280 100.0
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.0e-114 415.6 298 75.5
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 5.8e-110 401.4 296 74.3
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 9.3e-108 394.0 296 72.6
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 5.1e-98 361.7 290 69.3
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.0e-94 349.7 293 66.2
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.3e-93 347.1 293 66.9
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.9e-92 343.2 299 64.9
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 5.5e-92 341.7 265 71.7
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.5e-92 341.7 265 71.7
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 9.4e-92 340.9 298 65.4
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.6e-91 340.1 320 61.9
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 3.6e-91 339.0 297 64.0
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 7.9e-91 337.8 294 64.3
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 7.9e-91 337.8 281 67.3
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.0e-90 337.4 265 70.9
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 1.8e-90 336.7 295 62.7
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.8e-90 336.7 291 65.3
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 3.0e-90 335.9 301 62.8
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 6.7e-90 334.7 262 69.1
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 1.1e-89 334.0 293 64.5
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.5e-89 333.6 287 65.5
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.5e-89 333.6 289 63.7
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.5e-89 333.6 287 63.8
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 2.0e-89 333.2 293 63.5
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.5e-89 332.8 296 63.5
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 2.5e-89 332.8 284 64.8
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 4.3e-89 332.0 291 62.2
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 7.4e-89 331.3 299 64.2
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.3e-88 330.5 296 64.2
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.7e-88 330.1 299 63.2
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.7e-88 330.1 293 63.8
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 2.2e-88 329.7 293 62.1
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.8e-88 329.3 293 62.8
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.8e-88 329.3 279 65.6
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 2.8e-88 329.3 279 65.6
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 2.8e-88 329.3 295 63.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 3.7e-88 328.9 289 63.3
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 4.8e-88 328.6 293 63.1
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 6.3e-88 328.2 306 61.8
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 8.2e-88 327.8 300 63.7
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 8.2e-88 327.8 294 62.9
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.1e-87 327.4 292 63.0
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-87 327.4 284 64.4
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.1e-87 327.4 291 62.9
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 1.4e-87 327.0 287 62.4
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.8e-87 326.6 288 62.8
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.8e-87 326.6 297 62.3
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 2.4e-87 326.2 293 63.1
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 3.1e-87 325.9 293 62.1
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.1e-87 325.5 284 64.1
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 4.1e-87 325.5 272 65.4
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 4.1e-87 325.5 295 61.4
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 4.1e-87 325.5 295 62.7
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.3e-87 325.1 284 63.0
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 6.9e-87 324.7 294 62.9
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.2e-86 323.9 291 62.5
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 2.0e-86 323.2 287 63.8
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 2.0e-86 323.2 296 61.5
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 5.9e-86 321.6 295 62.0
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.0e-85 320.9 288 62.5
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.0e-85 320.9 298 61.7
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.9e-85 319.3 316 58.5
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 2.9e-85 319.3 294 62.6
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 2.9e-85 319.3 263 65.4
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 3.8e-85 318.9 287 63.1
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.1e-84 317.4 275 65.8
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.4e-84 317.0 294 61.2
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.4e-84 317.0 294 61.2
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.9e-84 316.6 316 58.2
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.9e-84 316.6 316 58.2
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.2e-84 315.8 300 59.3
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 3.2e-84 315.8 294 62.6
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 3.2e-84 315.8 299 59.9
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 4.2e-84 315.5 281 63.3
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 4.2e-84 315.5 281 63.0
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 5.5e-84 315.1 280 62.5
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 5.5e-84 315.1 280 62.5
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 5.5e-84 315.1 314 59.9
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 7.2e-84 314.7 304 59.2
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 7.2e-84 314.7 281 62.6
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 7.2e-84 314.7 301 60.1
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.2e-83 313.9 285 61.8
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.2e-83 313.9 285 61.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 2.7e-83 312.8 285 61.1
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 4.7e-83 312.0 276 63.0
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.0e-82 310.8 263 67.7
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.4e-82 310.5 276 60.5
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.8e-82 310.1 281 63.0
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 3.9e-82 308.9 303 58.7
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 8.8e-82 307.8 294 59.9
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 1.5e-81 307.0 295 59.7
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.5e-81 307.0 283 61.1
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 2.6e-81 306.2 299 60.2
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.4e-81 305.4 281 61.2
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 4.4e-81 305.4 241 68.0
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-80 303.5 248 64.9
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 2.2e-80 303.1 247 62.3
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 4.8e-80 302.0 294 58.8
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 6.3e-80 301.6 250 64.4
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.1e-79 300.8 250 64.0
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.1e-79 300.8 248 64.1
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.8e-79 300.1 299 58.5
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-78 297.4 248 64.1
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.9e-77 292.7 293 58.0
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.9e-77 292.7 314 53.2
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 3.8e-77 292.4 172 86.0
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.9e-76 290.0 269 62.5
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.5e-76 288.5 251 62.2
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.5e-76 288.5 253 61.3
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 9.4e-76 287.7 257 61.1
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.2e-75 287.3 250 62.4
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 6.7e-74 281.6 326 52.5
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.8e-74 281.2 234 63.2
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 2.4e-71 273.1 180 75.0
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 7.0e-71 271.6 293 55.6
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 7.7e-70 268.1 217 63.6
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 1.0e-69 267.7 258 59.3
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.5e-68 263.8 247 57.9
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 4.2e-68 262.3 295 52.9
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 8.0e-67 258.1 291 54.0
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.2e-65 254.2 283 54.4
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 3.4e-65 252.7 231 62.8
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 5.7e-65 251.9 278 52.5
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 9.8e-65 251.1 283 54.4
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.7e-64 249.2 264 53.4
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.2e-62 244.2 170 76.5
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 2.0e-62 243.4 300 51.3
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 1.3e-61 240.7 121 97.5
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.9e-61 239.6 286 51.7
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 8.8e-58 228.0 164 68.3
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.9e-56 222.2 208 58.7
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 8.3e-56 221.5 207 61.8
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.5e-54 216.1 265 52.1
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 2.3e-50 203.4 188 60.1
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 6.6e-45 185.3 103 85.4
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.7e-40 169.5 240 44.2
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 4.1e-39 166.0 308 36.0
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.0e-37 161.4 201 49.8
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.5e-25 120.9 131 53.4
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 2.0e-25 120.6 59 96.6
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-22 110.9 84 71.4
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 2.7e-22 110.2 84 71.4
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.9e-21 106.3 58 89.7
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 8.9e-18 95.1 51 88.2
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.2e-17 94.7 112 43.8
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.8e-16 89.7 51 86.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.9e-15 87.4 51 84.3
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.1e-15 85.5 55 78.2
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 3.0e-13 80.1 51 78.4
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 2.8e-11 73.6 63 61.9
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.8e-10 70.9 65 58.5
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 2.6e-09 67.0 73 54.8
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 2.6e-09 67.0 73 54.8
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.6e-06 56.2 44 68.2


User provided reference genes

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