Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 2.9e-232 808.1 395 100.0
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 1.5e-191 672.9 398 85.2
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 3.2e-154 548.9 403 70.5
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 1.1e-141 507.3 393 67.7
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 4.5e-140 501.9 380 67.1
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 4.5e-140 501.9 378 66.4
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.2e-138 495.7 398 64.1
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.6e-137 493.4 388 64.2
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.0e-136 489.2 400 64.8
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 5.1e-136 488.4 383 64.2
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 6.7e-136 488.0 398 64.3
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 6.7e-136 488.0 387 63.8
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 1.5e-135 486.9 385 66.0
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.9e-135 486.5 398 64.8
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.3e-135 485.7 398 64.8
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 7.4e-135 484.6 375 65.1
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.3e-134 483.8 380 64.2
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 3.7e-134 482.3 393 61.3
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 3.7e-134 482.3 379 64.6
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 4.8e-134 481.9 391 61.9
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 8.2e-134 481.1 388 62.9
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.1e-133 480.7 385 62.6
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 1.1e-133 480.7 403 61.8
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.1e-133 480.7 379 63.9
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 3.1e-133 479.2 375 65.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 5.3e-133 478.4 390 63.6
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.2e-132 477.2 398 60.6
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 2.6e-132 476.1 402 60.9
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.5e-132 475.3 396 60.4
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.3e-131 473.8 393 61.3
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.3e-131 473.8 396 59.8
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 1.3e-131 473.8 395 60.8
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.2e-131 473.0 390 62.8
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 2.9e-131 472.6 387 62.3
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 3.8e-131 472.2 423 59.8
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.8e-131 472.2 389 64.8
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 3.8e-131 472.2 363 63.4
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 5.0e-131 471.9 378 63.0
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 6.5e-131 471.5 403 60.8
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 8.5e-131 471.1 386 60.4
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.4e-130 470.3 396 59.6
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.4e-130 470.3 395 61.8
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 1.9e-130 469.9 386 60.1
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 5.5e-130 468.4 372 64.0
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 7.2e-130 468.0 381 62.7
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 9.4e-130 467.6 377 62.1
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.2e-129 467.2 376 60.9
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.2e-129 467.2 396 59.3
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 1.6e-129 466.8 384 63.3
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.7e-129 466.1 368 62.5
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 6.1e-129 464.9 377 61.8
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 1.0e-128 464.2 378 63.0
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.0e-128 464.2 365 63.8
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.4e-128 463.8 389 62.2
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 5.1e-128 461.8 399 58.6
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.5e-127 459.5 389 59.1
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.5e-127 459.5 396 58.6
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 2.5e-127 459.5 365 63.8
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 2.8e-126 456.1 397 59.7
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 8.2e-126 454.5 375 60.8
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.1e-125 454.1 375 60.8
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 1.8e-125 453.4 367 61.3
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.4e-125 453.0 387 59.9
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 6.9e-125 451.4 403 58.1
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 6.9e-125 451.4 388 60.1
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 3.4e-124 449.1 390 57.4
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 3.4e-124 449.1 394 57.9
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 3.4e-124 449.1 394 57.9
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-123 447.2 391 57.8
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 3.8e-123 445.7 389 57.8
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 3.8e-123 445.7 394 58.6
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 5.0e-123 445.3 377 59.7
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 5.0e-123 445.3 375 58.1
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 8.5e-123 444.5 377 60.5
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.9e-122 443.4 396 56.6
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 2.5e-122 443.0 387 59.2
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 3.2e-122 442.6 393 57.0
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 3.2e-122 442.6 393 57.0
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 4.2e-122 442.2 395 58.2
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 4.2e-122 442.2 377 60.5
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 7.2e-122 441.4 372 58.6
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 2.1e-121 439.9 393 57.3
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 2.1e-121 439.9 393 57.3
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.1e-121 439.9 403 57.1
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 2.7e-121 439.5 392 56.4
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 6.1e-121 438.3 388 57.2
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 6.1e-121 438.3 384 57.3
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 6.1e-121 438.3 385 58.7
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.8e-120 436.8 385 58.7
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.3e-120 436.4 403 57.1
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 6.7e-120 434.9 352 62.5
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 9.7e-119 431.0 388 56.2
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 6.3e-118 428.3 371 56.9
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.2e-116 424.1 374 56.4
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.6e-116 422.9 375 57.9
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 3.4e-116 422.5 398 57.3
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.2e-115 419.9 379 54.9
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.4e-114 417.2 437 51.0
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 7.2e-114 414.8 403 53.3
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 3.6e-113 412.5 371 56.1
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 8.0e-113 411.4 381 53.8
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.0e-112 411.0 381 53.8
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.4e-112 410.6 380 57.1
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.3e-110 404.1 365 55.9
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 3.5e-108 396.0 394 53.8
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.3e-107 394.0 393 52.7
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.1e-106 391.0 370 53.8
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 5.5e-106 388.7 346 57.8
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 7.2e-106 388.3 374 54.0
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.7e-105 386.3 375 52.0
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 1.7e-102 377.1 258 68.6
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 6.3e-102 375.2 271 67.2
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 8.2e-102 374.8 378 52.6
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.1e-101 374.4 410 50.7
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 6.8e-96 355.1 241 68.0
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 2.6e-95 353.2 595 38.5
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 3.4e-95 352.8 375 48.5
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 3.1e-93 346.3 364 50.5
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 5.9e-92 342.0 261 61.3
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 5.0e-91 339.0 354 53.4
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 5.0e-91 339.0 278 60.4
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 6.6e-91 338.6 301 57.8
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 8.6e-91 338.2 244 63.5
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 9.5e-90 334.7 246 61.8
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 2.1e-89 333.6 264 58.7
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 4.7e-89 332.4 244 61.9
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 4.7e-89 332.4 288 58.3
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.8e-88 330.5 364 47.3
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.0e-85 318.5 378 48.1
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 2.0e-79 300.4 402 42.5
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.0e-79 300.4 193 70.5
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 9.8e-71 271.6 255 58.8
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.0e-67 261.5 366 43.2
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 7.3e-66 255.4 246 56.1
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 7.3e-66 255.4 245 54.7
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 6.4e-62 242.3 158 72.2
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.4e-55 219.5 290 46.9
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.6e-50 202.6 130 73.8
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 8.7e-43 178.7 215 46.0
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 1.3e-38 164.9 404 33.4
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.5e-36 156.8 114 62.3
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.6e-33 147.9 209 42.6
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 2.8e-33 147.1 173 48.6
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 3.2e-29 133.7 166 48.2
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.6e-28 131.3 366 29.8
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 3.5e-28 130.2 106 58.5
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 8.2e-25 119.0 302 30.5
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 1.7e-22 111.3 91 59.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 6.1e-20 102.8 93 54.8
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 5.1e-19 99.8 93 53.8
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 8.7e-19 99.0 102 46.1
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 5.7e-18 96.3 93 52.7
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 7.4e-18 95.9 72 55.6
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 6.5e-14 82.8 286 26.9
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 6.7e-11 72.8 53 54.7
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 9.7e-10 68.9 52 59.6
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 2.2e-09 67.8 55 56.4
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.7e-09 67.0 59 50.8
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 6.5e-06 56.2 45 53.3


User provided reference genes

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