Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.8e-118 427.9 233 100.0
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.2e-73 280.4 218 77.1
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.4e-72 276.9 168 92.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.3e-70 270.4 168 91.7
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 8.4e-70 267.7 198 78.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.1e-69 267.3 168 90.5
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.4e-69 266.9 168 89.9
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 9.3e-69 264.2 171 87.7
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 2.1e-68 263.1 173 86.1
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 4.6e-68 261.9 184 82.1
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 4.6e-68 261.9 171 87.1
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 6.0e-68 261.5 168 88.7
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.7e-67 260.0 167 87.4
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.7e-67 260.0 168 86.9
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.7e-67 260.0 168 88.1
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.5e-66 256.1 185 74.1
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.5e-66 256.1 171 86.0
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.3e-66 255.4 194 76.8
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.3e-65 253.8 189 78.3
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 2.8e-65 252.7 183 81.4
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 3.6e-65 252.3 171 78.9
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 3.6e-65 252.3 171 84.2
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 4.8e-65 251.9 168 85.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.4e-64 250.4 168 84.5
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.8e-64 250.0 186 79.6
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 2.4e-64 249.6 168 84.5
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 3.1e-64 249.2 168 78.6
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.1e-64 249.2 168 85.7
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.1e-64 249.2 168 85.7
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 6.9e-64 248.1 165 78.2
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 6.9e-64 248.1 168 78.6
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 6.9e-64 248.1 168 84.5
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 6.9e-64 248.1 168 85.7
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 9.0e-64 247.7 171 76.0
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.5e-63 246.9 168 83.9
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 2.0e-63 246.5 171 81.9
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.4e-63 245.7 165 77.6
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 5.8e-63 245.0 168 83.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 9.9e-63 244.2 168 78.6
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.3e-62 243.8 171 80.1
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.3e-62 243.8 171 80.1
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.3e-62 243.8 171 80.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.7e-62 243.4 171 80.1
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.7e-62 243.4 168 83.3
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 2.2e-62 243.0 198 71.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 2.9e-62 242.7 168 82.7
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 2.9e-62 242.7 168 82.7
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.9e-62 242.7 168 78.6
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 3.8e-62 242.3 168 81.0
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 4.9e-62 241.9 171 79.5
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 4.9e-62 241.9 168 82.1
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 4.9e-62 241.9 168 82.7
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 6.4e-62 241.5 168 75.6
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 8.4e-62 241.1 168 75.6
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.1e-61 240.7 198 72.2
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.4e-61 240.4 168 75.0
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.9e-61 240.0 172 79.7
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.9e-61 240.0 174 79.9
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.9e-61 240.0 165 73.9
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.4e-61 239.6 186 76.3
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.4e-61 239.6 162 85.8
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.2e-61 239.2 173 79.2
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.2e-61 239.2 203 71.9
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 7.1e-61 238.0 173 79.2
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 7.1e-61 238.0 168 81.5
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 7.1e-61 238.0 173 78.6
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 9.3e-61 237.7 174 73.6
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.2e-60 237.3 168 80.4
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.6e-60 236.9 199 70.9
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.1e-60 236.5 178 71.9
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 7.9e-60 234.6 170 74.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 7.9e-60 234.6 199 71.4
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 7.9e-60 234.6 171 73.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 7.9e-60 234.6 170 73.5
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.0e-59 234.2 203 70.9
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.8e-59 233.4 177 71.2
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 5.1e-59 231.9 171 77.2
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 8.7e-59 231.1 171 78.9
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 8.7e-59 231.1 197 71.6
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.5e-58 230.3 172 76.7
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.5e-58 230.3 193 65.3
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 169 81.1
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 169 81.1
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.9e-58 229.9 217 64.5
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 2.5e-58 229.6 215 64.2
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.3e-58 228.8 199 65.3
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 7.4e-58 228.0 199 64.8
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.7e-57 225.7 180 71.1
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.4e-56 223.8 170 71.2
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.4e-56 223.8 199 63.3
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 5.3e-56 221.9 171 70.8
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 3.4e-55 219.2 171 76.0
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 5.8e-55 218.4 182 66.5
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.9e-54 216.1 180 66.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 2.3e-51 206.5 116 90.5
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.9e-50 203.4 193 59.6
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 7.4e-50 201.4 138 76.8
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 9.6e-50 201.1 184 69.6
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 9.6e-50 201.1 219 58.0
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 9.6e-50 201.1 184 62.5
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 8.2e-49 198.0 180 67.8
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.4e-48 196.4 142 73.2
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 2.2e-46 189.9 177 62.1
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 2.2e-46 189.9 182 59.3
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.2e-45 186.0 168 70.8
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.6e-44 183.7 130 74.6
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 3.0e-43 179.5 175 59.4
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 4.3e-42 175.6 168 57.7
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.8e-41 172.9 125 82.4
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.1e-37 161.0 253 49.0
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 5.5e-37 158.7 143 57.3
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.6e-36 157.1 123 66.7
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.9e-34 150.2 162 54.9
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.1e-32 142.9 81 88.9
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.2e-31 141.0 81 87.7
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.9e-31 138.7 81 85.2
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.3e-30 137.5 81 85.2
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.3e-25 120.9 73 82.2
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 6.3e-25 118.6 123 51.2
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.4e-24 117.5 83 72.3
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.4e-24 117.5 100 59.0
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 5.3e-24 115.5 136 47.8
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.2e-23 114.4 129 51.2
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 2.0e-23 113.6 97 73.2
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 3.4e-23 112.8 188 40.4
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 6.5e-22 108.6 79 67.1
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.9e-21 107.1 186 39.8
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.5e-21 106.7 187 38.0
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 3.2e-21 106.3 186 39.2
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 4.2e-21 105.9 152 44.7
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.0e-19 101.3 151 45.0
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.8e-17 93.2 65 75.4
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.2e-15 87.8 162 38.3
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 5.0e-14 82.4 126 39.7
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.7e-09 67.4 115 40.0
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 8.2e-09 65.1 50 66.0
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 7.0e-08 62.0 122 36.1
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 7.0e-08 62.0 53 83.0
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.0e-07 60.5 133 34.6


User provided reference genes

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