Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.8e-54 215.7 109 100.0
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.7e-46 187.2 110 89.1
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-41 172.6 102 86.3
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 7.2e-40 167.2 102 83.3
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.7e-31 138.7 106 74.5
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 5.7e-29 131.0 106 71.7
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.1e-27 125.2 104 65.4
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 5.5e-24 114.4 107 62.6
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.5e-24 113.6 106 65.1
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.2e-23 113.2 97 70.1
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.7e-23 111.3 106 64.2
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 6.1e-23 110.9 103 65.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.0e-22 110.2 106 63.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.4e-22 109.8 103 65.0
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 3.0e-22 108.6 104 62.5
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 3.0e-22 108.6 102 63.7
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 4.0e-22 108.2 103 61.2
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.8e-22 107.5 92 65.2
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.9e-22 107.1 96 64.6
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.2e-21 106.7 112 59.8
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-21 105.5 96 63.5
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.7e-20 102.8 110 55.5
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.7e-20 102.8 96 62.5
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.7e-20 101.7 90 65.6
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.7e-20 101.7 102 60.8
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.3e-20 100.5 112 55.4
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.4e-19 99.8 94 59.6
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.8e-19 99.4 102 59.8
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 5.4e-19 97.8 103 59.2
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 9.2e-19 97.1 87 63.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.2e-18 96.7 92 57.6
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.2e-18 96.7 104 56.7
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.7e-18 95.5 93 60.2
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.0e-17 93.6 78 65.4
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.7e-17 92.8 90 61.1
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.7e-17 92.8 80 60.0
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.9e-17 92.0 100 53.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.9e-17 92.0 78 64.1
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.6e-17 90.9 78 64.1
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 6.6e-17 90.9 95 56.8
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.9e-16 89.4 93 59.1
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 4.3e-16 88.2 108 51.9
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 4.3e-16 88.2 96 53.1
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.3e-16 87.4 93 58.1
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.7e-15 84.7 101 48.5
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 6.1e-15 84.3 101 47.5
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.0e-14 83.6 97 49.5
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.8e-14 82.8 100 51.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.3e-14 82.4 100 51.0
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.3e-14 82.4 85 56.5
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 3.0e-14 82.0 92 54.3
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 4.0e-14 81.6 101 46.5
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 5.2e-14 81.3 79 62.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 5.2e-14 81.3 81 56.8
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 6.8e-14 80.9 89 52.8
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 6.8e-14 80.9 93 54.8
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.2e-13 80.1 81 56.8
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.6e-13 79.0 80 58.8
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 2.6e-13 79.0 101 51.5
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 3.4e-13 78.6 80 57.5
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 3.4e-13 78.6 90 56.7
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.8e-13 77.8 105 46.7
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.5e-13 77.4 93 51.6
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 9.8e-13 77.0 95 49.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.3e-12 76.6 94 52.1
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.7e-12 76.3 94 53.2
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.7e-12 76.3 94 52.1
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.7e-12 76.3 94 52.1
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.7e-12 76.3 94 52.1
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.7e-12 76.3 92 54.3
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.2e-12 75.9 99 49.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-12 75.9 94 52.1
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.9e-12 75.5 92 53.3
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.4e-11 72.4 84 52.4
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 7.0e-11 70.9 93 44.1
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 7.0e-11 70.9 83 49.4
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 7.0e-11 70.9 99 44.4
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.2e-10 70.1 45 75.6
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.6e-10 69.7 77 51.9
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.6e-10 69.7 44 75.0
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 2.7e-10 68.9 105 42.9
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 3.5e-10 68.6 56 67.9
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.6e-10 68.2 73 52.1
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 4.6e-10 68.2 106 42.5
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.8e-10 67.4 44 72.7
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 1.0e-09 67.0 81 53.1
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.0e-09 67.0 96 45.8
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.0e-09 67.0 45 75.6
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.0e-09 67.0 84 50.0
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.7e-09 66.2 83 53.0
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 73 56.2
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.7e-09 66.2 43 72.1
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.7e-09 66.2 63 55.6
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.7e-09 66.2 86 47.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.7e-09 66.2 99 48.5
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 2.3e-09 65.9 96 46.9
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.3e-09 65.9 79 48.1
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.3e-09 65.9 44 70.5
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 3.9e-09 65.1 63 54.0
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.9e-09 65.1 63 54.0
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 3.9e-09 65.1 63 54.0
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 3.9e-09 65.1 63 54.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.9e-09 65.1 63 54.0
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.9e-09 65.1 99 45.5
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 3.9e-09 65.1 44 68.2
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 5.0e-09 64.7 85 43.5
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 5.0e-09 64.7 90 48.9
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 6.6e-09 64.3 89 43.8
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 6.6e-09 64.3 42 71.4
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.6e-09 64.3 42 71.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 8.6e-09 63.9 87 43.7
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 8.6e-09 63.9 84 46.4
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 8.6e-09 63.9 87 46.0
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-08 63.2 63 54.0
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-08 63.2 63 54.0
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 63 54.0
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.5e-08 63.2 63 55.6
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 84 42.9
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.5e-08 63.2 46 63.0
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.5e-08 63.2 69 52.2
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.5e-08 63.2 80 51.2
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 63 54.0
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.9e-08 62.8 92 43.5
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.5e-08 62.4 106 39.6
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.3e-08 62.0 63 57.1
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.3e-08 62.0 94 43.6
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 4.3e-08 61.6 63 50.8
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 4.3e-08 61.6 63 50.8
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.3e-08 61.6 74 44.6
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 4.3e-08 61.6 101 45.5
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 5.6e-08 61.2 63 52.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 5.6e-08 61.2 55 60.0
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 5.6e-08 61.2 44 63.6
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 5.6e-08 61.2 98 37.8
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 7.3e-08 60.8 63 52.4
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 7.3e-08 60.8 100 39.0
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 9.5e-08 60.5 44 61.4
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 9.5e-08 60.5 55 58.2
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-07 60.1 63 49.2
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-07 60.1 63 49.2
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.2e-07 60.1 63 49.2
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.2e-07 60.1 58 58.6
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.2e-07 60.1 90 44.4
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 1.6e-07 59.7 88 42.0
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.6e-07 59.7 98 41.8
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-07 59.7 91 41.8
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 1.6e-07 59.7 91 40.7
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.6e-07 59.7 74 44.6
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.1e-07 59.3 63 54.0
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-07 59.3 55 56.4
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.1e-07 59.3 102 37.3
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.8e-07 58.9 48 58.3
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 3.6e-07 58.5 43 69.8
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.6e-07 58.5 98 44.9
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 4.7e-07 58.2 40 70.0
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 4.7e-07 58.2 40 70.0
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 8.0e-07 57.4 98 37.8
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 8.0e-07 57.4 46 60.9
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 8.0e-07 57.4 88 43.2
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 1.1e-06 57.0 44 61.4
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 1.1e-06 57.0 46 60.9
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.1e-06 57.0 44 61.4
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.4e-06 56.6 93 41.9
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 1.8e-06 56.2 52 55.8
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 3.1e-06 55.5 91 37.4
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-06 55.5 91 39.6
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 3.1e-06 55.5 38 71.1
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 4.0e-06 55.1 43 60.5
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 5.2e-06 54.7 45 62.2
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 5.2e-06 54.7 43 67.4
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 5.2e-06 54.7 48 56.2
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 5.2e-06 54.7 46 60.9
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 5.2e-06 54.7 65 50.8
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 6.8e-06 54.3 43 65.1
Glyma.13G153018 Glycine max HOM05D003360 ORTHO05D003759 6.8e-06 54.3 46 63.0
unitig_749.g14295 Utricularia gibba HOM05D003360 ORTHO05D003759 6.8e-06 54.3 46 58.7
CiPaw.09G012500 Carya illinoinensis HOM05D003360 ORTHO05D003759 8.9e-06 53.9 43 67.4
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 8.9e-06 53.9 46 60.9
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 8.9e-06 53.9 46 60.9
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 8.9e-06 53.9 46 60.9
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 8.9e-06 53.9 46 60.9
Lj5g0024704 Lotus japonicus HOM05D003360 ORTHO05D003759 8.9e-06 53.9 48 60.4
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 8.9e-06 53.9 46 60.9
GSVIVG01033826001 Vitis vinifera HOM05D003360 ORTHO05D003759 8.9e-06 53.9 43 65.1


User provided reference genes

Program Settings