Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 6.1e-291 1003.4 506 100.0
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 6.1e-251 870.5 505 89.3
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 5.6e-204 714.5 505 72.5
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 4.0e-202 708.4 508 72.2
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 2.0e-201 706.1 504 72.6
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 3.8e-200 701.8 508 72.4
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 6.7e-197 691.0 506 70.6
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 1.3e-195 686.8 498 70.3
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 1.4e-194 683.3 508 69.9
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 4.0e-194 681.8 506 70.6
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 2.6e-193 679.1 488 71.9
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 5.8e-193 677.9 508 69.9
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 1.1e-191 673.7 499 69.9
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 2.1e-190 669.5 501 67.5
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.0e-189 667.2 504 68.7
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.0e-189 665.6 504 68.5
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 5.1e-189 664.8 507 68.2
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 2.5e-188 662.5 511 67.7
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 3.3e-188 662.1 506 67.0
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.3e-187 660.2 505 67.5
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.3e-187 660.2 511 67.3
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 2.8e-187 659.1 506 66.8
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 4.8e-187 658.3 505 67.7
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.4e-186 656.8 511 67.3
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 1.4e-186 656.8 494 68.6
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 1.5e-185 653.3 446 73.5
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 4.5e-185 651.7 509 67.0
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.2e-184 649.4 448 72.8
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 2.2e-184 649.4 507 67.3
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 5.5e-183 644.8 506 66.8
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 1.6e-182 643.3 484 68.8
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 2.1e-182 642.9 505 66.5
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 1.8e-181 639.8 513 65.1
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 3.0e-181 639.0 497 67.0
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 3.9e-181 638.6 506 65.8
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 5.1e-181 638.3 506 65.4
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 6.3e-179 631.3 507 64.9
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 5.3e-178 628.2 491 66.8
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 9.0e-178 627.5 500 65.8
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 7.7e-177 624.4 512 63.1
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 1.0e-176 624.0 502 64.3
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 1.7e-176 623.2 502 64.3
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 1.7e-176 623.2 497 64.2
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 2.2e-176 622.9 512 62.9
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 5.0e-176 621.7 499 64.7
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 9.4e-175 617.5 499 65.3
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 1.2e-174 617.1 507 63.3
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 1.2e-174 617.1 493 66.1
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 1.6e-174 616.7 496 65.5
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 6.1e-174 614.8 500 64.4
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 3.9e-173 612.1 491 66.0
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 6.3e-171 604.7 493 63.5
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 5.3e-170 601.7 495 63.0
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 6.9e-170 601.3 495 64.0
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 6.9e-170 601.3 495 64.0
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 9.1e-170 600.9 493 63.5
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 2.6e-169 599.4 507 62.5
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 2.2e-168 596.3 498 63.7
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 2.2e-168 596.3 426 70.9
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 2.2e-168 596.3 493 64.5
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 5.0e-168 595.1 461 67.5
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 1.4e-167 593.6 487 63.2
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 2.5e-167 592.8 497 62.4
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 7.2e-167 591.3 493 62.7
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 9.4e-167 590.9 493 62.9
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 9.4e-167 590.9 498 62.2
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 3.6e-166 589.0 517 60.7
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 3.6e-166 589.0 492 62.4
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 6.3e-163 578.2 497 62.6
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.1e-162 577.4 498 62.4
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 2.9e-160 569.3 584 52.7
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 8.5e-160 567.8 490 59.8
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 1.6e-158 563.5 449 64.8
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 2.1e-158 563.1 451 63.4
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 6.1e-158 561.6 489 59.7
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 9.1e-154 547.7 494 57.9
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.6e-153 547.0 383 70.8
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.0e-152 542.0 425 66.4
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 5.0e-152 542.0 493 58.0
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 4.2e-151 538.9 564 54.6
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.2e-150 537.3 416 67.3
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 1.2e-150 537.3 485 59.4
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 2.1e-150 536.6 491 59.1
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 6.8e-149 531.6 489 57.7
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 1.3e-147 527.3 501 53.7
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.2e-145 520.8 347 73.8
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 4.5e-145 518.8 549 56.3
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 2.0e-140 503.4 504 56.2
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 3.4e-140 502.7 529 55.6
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 4.3e-135 485.7 511 54.8
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 7.3e-135 485.0 498 54.8
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 4.0e-133 479.2 500 52.6
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.6e-132 476.5 489 54.8
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 1.4e-130 470.7 367 64.6
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 6.6e-128 461.8 353 67.4
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 2.1e-126 456.8 508 52.2
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.4e-122 444.1 492 51.4
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 3.2e-122 443.0 337 68.2
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 7.3e-119 431.8 357 60.8
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 2.3e-117 426.8 453 52.8
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 3.4e-116 422.9 309 72.5
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 5.4e-114 415.6 388 57.5
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 5.6e-111 405.6 501 46.9
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 4.7e-110 402.5 504 45.6
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 1.6e-105 387.5 451 49.7
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 7.3e-103 378.6 502 46.8
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 5.2e-101 372.5 520 43.3
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 2.9e-99 366.7 321 60.1
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 1.0e-96 358.2 297 62.6
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 1.4e-93 347.8 316 55.7
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 1.1e-85 321.6 305 56.7
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 4.0e-77 293.1 370 45.1
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 6.9e-77 292.4 298 54.0
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 2.9e-67 260.4 495 36.2
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.0e-64 251.9 421 40.4
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 1.5e-63 248.1 792 26.6
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 2.2e-54 217.6 168 66.1
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.8e-45 188.0 179 55.9
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.1e-41 174.5 186 52.7
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 7.5e-39 166.0 457 29.5
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 3.7e-30 137.1 191 42.4
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.7e-28 131.0 67 91.0
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.7e-25 120.2 79 67.1
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 8.0e-25 119.4 501 25.1
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 8.8e-24 115.9 91 61.5
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 7.5e-23 112.8 115 53.0
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 8.3e-22 109.4 121 53.7
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.4e-13 81.3 63 65.1
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 3.5e-12 77.4 237 32.1
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.5e-10 72.0 101 45.5
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.2e-07 62.4 44 59.1


User provided reference genes

Program Settings