Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 0.0e+00 1282.7 630 100.0
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 7.3e-185 651.4 710 55.6
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 1.7e-181 640.2 710 54.8
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 1.2e-174 617.5 710 52.8
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 1.7e-170 603.6 710 51.1
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 5.1e-170 602.1 710 51.8
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 6.6e-170 601.7 703 52.6
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 1.1e-169 600.9 710 50.7
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.1e-169 600.9 711 51.3
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 3.3e-169 599.4 710 51.1
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.3e-169 599.0 711 51.1
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 5.6e-169 598.6 704 52.6
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 5.6e-169 598.6 710 51.5
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 1.6e-168 597.0 710 51.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.1e-168 596.7 704 51.7
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.1e-167 594.3 709 51.1
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 4.0e-167 592.4 710 50.3
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 4.0e-167 592.4 710 50.7
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.2e-166 590.9 703 51.6
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.5e-166 590.5 705 51.5
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.6e-166 589.7 712 51.1
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 4.4e-166 589.0 710 50.1
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 4.4e-166 589.0 710 50.3
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 5.8e-166 588.6 710 50.3
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.3e-165 587.4 710 50.0
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.3e-165 587.4 712 50.3
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 3.8e-165 585.9 704 51.3
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 3.8e-165 585.9 710 50.4
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 4.9e-165 585.5 712 50.3
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 8.4e-165 584.7 712 50.3
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.1e-164 584.3 710 50.3
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.4e-164 583.9 710 49.4
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.4e-164 583.2 719 49.9
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 3.2e-164 582.8 712 49.7
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 3.2e-164 582.8 712 49.6
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.2e-163 580.9 710 50.4
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 2.1e-163 580.1 642 53.1
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 2.1e-163 580.1 703 51.5
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 2.1e-163 580.1 703 51.5
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 6.0e-163 578.6 712 49.4
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 1.0e-162 577.8 703 50.4
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.7e-162 577.0 712 49.9
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.3e-162 576.6 712 49.7
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 5.1e-162 575.5 711 50.1
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 8.7e-162 574.7 710 49.6
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 8.7e-162 574.7 710 49.6
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 1.1e-161 574.3 710 49.0
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.5e-161 573.9 703 51.1
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.9e-161 573.5 715 49.1
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.9e-161 573.5 710 49.3
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.9e-161 573.5 710 50.7
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 4.3e-161 572.4 710 50.3
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 4.3e-161 572.4 711 50.1
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 5.6e-161 572.0 704 49.6
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 5.6e-161 572.0 703 49.6
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 5.6e-161 572.0 710 50.7
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 7.3e-161 571.6 710 49.9
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 9.6e-161 571.2 703 50.8
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.3e-160 570.9 705 49.2
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 2.1e-160 570.1 710 49.9
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 3.6e-160 569.3 710 48.7
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 4.8e-160 568.9 677 51.4
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 8.1e-160 568.2 737 49.8
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 1.8e-159 567.0 711 49.4
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.0e-159 565.8 639 52.7
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 4.0e-159 565.8 706 49.4
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 4.0e-159 565.8 710 48.9
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 5.3e-159 565.5 709 49.2
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 5.3e-159 565.5 710 49.2
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 6.9e-159 565.1 677 49.3
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 6.9e-159 565.1 710 48.7
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 9.0e-159 564.7 703 50.1
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.5e-158 563.9 702 49.1
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 2.6e-158 563.1 703 48.8
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 5.8e-158 562.0 640 52.3
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 9.9e-158 561.2 710 48.6
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 9.9e-158 561.2 710 48.5
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.7e-157 560.5 710 48.5
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 6.4e-157 558.5 711 48.9
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 6.4e-157 558.5 710 48.3
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 1.1e-156 557.8 706 48.4
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.1e-156 557.8 705 48.4
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 1.4e-156 557.4 706 48.3
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 3.2e-156 556.2 710 48.2
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 3.2e-156 556.2 697 49.5
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 4.2e-156 555.8 707 48.4
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 4.2e-156 555.8 709 48.9
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.2e-155 554.3 711 48.4
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.2e-155 554.3 712 47.6
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.6e-155 553.9 710 48.2
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.1e-155 553.5 710 48.0
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 2.7e-155 553.1 706 48.0
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 2.7e-155 553.1 711 49.2
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 3.5e-155 552.7 711 48.7
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.3e-154 550.8 710 48.0
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.0e-154 549.7 710 47.7
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 3.0e-154 549.7 703 48.1
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 5.1e-154 548.9 710 47.7
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 6.6e-154 548.5 704 48.2
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.1e-153 547.7 733 46.7
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.5e-153 547.4 733 46.8
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 7.4e-153 545.0 725 49.2
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 2.8e-152 543.1 711 47.7
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.8e-152 542.3 711 47.5
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 6.2e-152 542.0 711 47.0
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 8.1e-152 541.6 701 48.2
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 2.4e-151 540.0 705 47.4
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 4.0e-151 539.3 711 47.7
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 4.0e-151 539.3 711 48.5
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 5.3e-151 538.9 701 47.8
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 6.9e-151 538.5 711 47.4
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 5.8e-150 535.4 703 46.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.1e-147 526.9 703 45.5
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 4.2e-140 502.7 708 44.9
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.1e-135 488.0 737 42.7
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.2e-131 474.6 672 46.6
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 7.9e-131 471.9 706 41.1
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.0e-130 471.5 706 41.5
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 5.7e-129 465.7 700 42.0
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.8e-127 460.7 694 42.5
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 2.6e-126 456.8 585 49.1
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.9e-124 450.7 703 40.8
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.3e-120 438.0 598 46.8
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 2.8e-120 436.8 703 40.5
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 2.4e-119 433.7 695 41.2
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 5.0e-117 426.0 579 45.8
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 1.1e-116 424.9 590 43.4
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 4.1e-111 406.4 693 39.2
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 1.6e-107 394.4 395 57.7
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.5e-100 370.5 589 42.1
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 2.2e-96 357.5 301 65.1
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 6.8e-74 282.7 341 50.7
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 4.0e-66 256.9 697 32.4
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 8.3e-64 249.2 345 43.2
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 6.6e-61 239.6 183 68.9
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 9.2e-55 219.2 625 29.6
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 8.6e-53 212.6 181 61.9
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 7.8e-46 189.5 143 66.4
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.5e-33 148.7 78 91.0
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 8.1e-27 126.3 129 58.1
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 1.8e-21 108.6 66 75.8
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 8.7e-21 106.3 61 80.3
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 6.3e-19 100.1 133 45.1
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.1e-18 97.8 205 34.1
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 5.0e-16 90.5 110 50.9
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 1.8e-13 82.0 53 71.7
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 2.2e-11 75.1 48 79.2
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 1.3e-08 65.9 66 60.6
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 2.7e-06 58.2 42 69.0


User provided reference genes

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