Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 4.0e-224 781.2 415 100.0
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.4e-181 639.8 417 79.6
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-150 537.0 417 67.1
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.9e-149 533.1 417 66.7
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 6.1e-148 528.1 416 65.9
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 4.0e-147 525.4 415 66.5
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.0e-147 525.4 415 66.5
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 1.2e-146 523.9 416 65.1
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.0e-146 523.1 417 65.5
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 7.5e-146 521.2 416 63.9
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 9.8e-146 520.8 415 65.3
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 9.8e-146 520.8 417 65.0
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 9.8e-146 520.8 416 65.6
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.3e-145 520.4 416 65.9
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 1.7e-145 520.0 412 66.7
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 6.3e-145 518.1 415 63.9
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 3.1e-144 515.8 416 63.9
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.5e-141 506.9 416 62.0
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.6e-140 503.4 418 62.7
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 8.0e-140 501.1 417 63.8
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.0e-139 500.7 415 66.5
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 2.3e-139 499.6 416 63.2
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 2.0e-138 496.5 417 61.9
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 9.8e-138 494.2 418 62.2
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.7e-137 493.4 416 61.8
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.7e-137 493.4 439 59.2
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 4.9e-137 491.9 416 63.2
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 4.9e-137 491.9 418 62.0
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 4.9e-137 491.9 417 61.4
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 5.4e-136 488.4 419 60.4
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.7e-134 483.4 416 61.3
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 3.9e-134 482.3 388 64.2
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 4.3e-133 478.8 415 60.2
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 4.3e-133 478.8 415 60.0
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.2e-132 477.2 415 61.2
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 2.1e-132 476.5 395 64.3
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 8.0e-132 474.6 415 59.5
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.2e-130 470.7 414 58.9
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 1.2e-130 470.7 416 58.9
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.5e-130 470.3 477 53.5
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 5.8e-130 468.4 416 59.1
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 7.5e-130 468.0 416 59.4
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.3e-129 467.2 415 58.6
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 3.7e-129 465.7 415 58.8
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.1e-128 464.2 398 60.1
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.4e-128 463.8 389 62.2
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.4e-128 463.8 416 58.7
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 2.4e-128 463.0 406 58.1
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.2e-128 462.6 416 57.7
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 3.2e-128 462.6 415 59.0
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 4.1e-128 462.2 418 58.6
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 5.4e-128 461.8 411 58.4
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 9.2e-128 461.1 415 59.0
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 9.2e-128 461.1 416 58.2
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 4.6e-127 458.8 354 66.1
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 6.0e-127 458.4 416 57.2
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 1.0e-126 457.6 417 59.7
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.7e-126 456.8 417 59.2
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.1e-125 454.1 416 58.9
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.1e-125 454.1 403 59.8
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 4.3e-125 452.2 416 57.0
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 7.3e-125 451.4 389 60.9
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 1.6e-124 450.3 360 63.3
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 2.8e-124 449.5 407 58.0
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 4.7e-124 448.7 393 59.3
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.1e-123 447.6 415 56.6
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 2.6e-122 443.0 414 56.5
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 4.4e-122 442.2 388 60.1
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.7e-121 440.3 416 56.5
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 2.9e-121 439.5 414 58.0
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 4.9e-121 438.7 358 63.7
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.4e-120 437.2 355 63.1
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 4.6e-119 432.2 361 63.7
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 7.8e-119 431.4 415 56.4
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 1.3e-118 430.6 363 59.8
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 5.6e-117 425.2 349 61.9
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 2.1e-116 423.3 418 52.9
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 2.8e-116 422.9 416 52.9
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 4.0e-115 419.1 397 54.7
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.5e-114 417.2 355 61.1
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 8.4e-113 411.4 421 51.8
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.4e-112 409.8 421 52.5
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 5.4e-112 408.7 408 53.7
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.2e-111 407.5 346 61.8
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 6.0e-111 405.2 355 60.0
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 1.3e-110 404.1 415 52.0
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 2.3e-110 403.3 395 53.2
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 2.3e-110 403.3 419 52.7
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 9.6e-109 397.9 396 51.5
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.6e-108 397.1 303 69.0
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 8.1e-108 394.8 419 51.3
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 2.4e-107 393.3 420 53.3
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 6.9e-107 391.7 417 50.6
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.9e-107 391.3 413 51.6
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 5.8e-106 388.7 414 51.7
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 9.9e-106 387.9 414 52.2
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 3.8e-105 386.0 421 49.9
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.9e-104 383.6 420 51.4
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 9.3e-104 381.3 397 52.1
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 7.8e-103 378.3 398 50.3
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.7e-102 377.1 401 51.4
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 2.3e-102 376.7 417 50.6
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 2.2e-97 360.1 193 91.7
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.0e-95 352.1 426 45.8
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.1e-93 347.8 464 44.2
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 2.8e-92 343.2 451 44.3
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.1e-88 331.3 264 59.8
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 4.9e-81 305.8 215 68.4
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.6e-74 282.0 193 74.6
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 5.0e-73 279.3 354 47.7
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 8.5e-73 278.5 197 73.1
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.8e-70 270.8 368 39.9
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.1e-69 268.1 448 36.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.9e-69 267.3 277 52.0
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 2.8e-68 263.5 428 35.7
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.0e-65 255.0 400 39.0
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.2e-60 237.3 311 43.7
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 2.2e-52 210.7 234 48.7
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 2.7e-47 193.7 131 73.3
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.2e-44 184.1 164 58.5
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 7.7e-42 175.6 259 41.7
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 3.8e-41 173.3 347 30.3
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.8e-35 154.5 110 71.8
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.4e-35 152.9 152 56.6
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.6e-34 151.4 315 32.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 3.5e-34 150.2 164 51.2
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 2.8e-31 140.6 402 26.6
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 3.5e-26 123.6 141 48.9
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 8.6e-25 119.0 78 73.1
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.6e-21 107.5 142 44.4
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 2.5e-16 90.9 123 40.7
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.8e-14 84.7 335 24.8
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 5.2e-14 83.2 94 45.7
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 2.9e-12 77.4 101 44.6
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 3.2e-11 73.9 103 40.8
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.1e-08 65.5 68 52.9
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.1e-08 65.5 80 45.0


User provided reference genes

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