Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 1.1e-127 459.9 226 100.0
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.5e-60 236.9 128 90.6
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.4e-50 203.8 123 81.3
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 2.2e-30 136.7 113 61.9
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 2.8e-30 136.3 126 59.5
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 8.2e-30 134.8 122 54.1
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 8.2e-30 134.8 133 52.6
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 2.4e-29 133.3 123 56.1
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 4.1e-29 132.5 123 52.8
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 9.1e-29 131.3 122 54.9
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 4.5e-28 129.0 132 53.8
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 5.9e-28 128.6 147 51.7
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.7e-27 127.1 120 54.2
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 2.9e-27 126.3 112 58.0
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 8.5e-27 124.8 123 53.7
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.9e-26 123.6 136 45.6
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.2e-26 122.5 122 50.8
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 1.2e-25 120.9 120 54.2
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 1.6e-25 120.6 123 52.8
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 2.1e-25 120.2 127 52.0
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 2.7e-25 119.8 119 51.3
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 4.7e-25 119.0 113 54.9
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 8.0e-25 118.2 139 46.0
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 1.4e-24 117.5 93 59.1
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 1.8e-24 117.1 123 50.4
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 1.8e-24 117.1 123 53.7
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.8e-24 117.1 139 47.5
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.3e-24 116.7 120 51.7
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 3.0e-24 116.3 120 51.7
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 4.0e-24 115.9 128 46.1
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.5e-23 114.0 131 48.9
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 5.7e-23 112.1 128 44.5
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 1.3e-22 110.9 125 44.8
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.8e-22 109.8 123 48.0
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 2.8e-22 109.8 140 45.7
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 1.8e-21 107.1 119 52.1
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 3.1e-21 106.3 129 47.3
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 5.3e-21 105.5 153 39.9
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 5.3e-21 105.5 129 47.3
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 9.1e-21 104.8 126 46.0
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 9.1e-21 104.8 157 42.0
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 5.9e-20 102.1 129 46.5
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 7.7e-20 101.7 100 52.0
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.0e-19 101.3 126 43.7
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 1.0e-19 101.3 102 52.0
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 1.3e-19 100.9 100 53.0
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 1.3e-19 100.9 127 46.5
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 1.7e-19 100.5 117 45.3
Sabra03G0108500 Salix brachista HOM05D007217 ORTHO05D009092 5.0e-19 99.0 62 77.4
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 8.5e-19 98.2 119 44.5
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 1.1e-18 97.8 120 43.3
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 1.1e-18 97.8 147 42.2
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 1.5e-18 97.4 102 46.1
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 1.9e-18 97.1 120 44.2
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 4.2e-18 95.9 120 47.5
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 5.5e-18 95.5 138 39.1
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 7.2e-18 95.1 100 51.0
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 1.6e-17 94.0 124 44.4
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.6e-17 94.0 116 45.7
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 2.1e-17 93.6 89 55.1
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 2.7e-17 93.2 145 42.1
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 2.7e-17 93.2 105 42.9
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 3.6e-17 92.8 102 49.0
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 3.6e-17 92.8 114 50.0
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 4.7e-17 92.4 102 49.0
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 4.7e-17 92.4 110 44.5
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.7e-17 92.4 84 58.3
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.7e-17 92.4 80 60.0
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 4.7e-17 92.4 125 44.8
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 8.0e-17 91.7 102 48.0
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.0e-16 91.3 124 41.1
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.0e-16 91.3 132 43.2
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.0e-16 91.3 132 43.2
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.0e-16 91.3 130 41.5
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.4e-16 90.9 125 39.2
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 1.4e-16 90.9 108 45.4
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.4e-16 90.9 113 44.2
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 4.0e-16 89.4 119 42.9
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 4.0e-16 89.4 124 43.5
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 4.0e-16 89.4 123 40.7
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 5.2e-16 89.0 110 42.7
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 6.8e-16 88.6 97 46.4
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 1.2e-15 87.8 151 36.4
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 1.5e-15 87.4 124 41.9
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 1.5e-15 87.4 124 40.3
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 2.6e-15 86.7 124 41.1
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 4.4e-15 85.9 107 43.9
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 9.8e-15 84.7 143 37.1
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.3e-14 84.3 128 36.7
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 1.7e-14 84.0 118 42.4
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 2.2e-14 83.6 123 43.9
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 2.0e-12 77.0 136 36.8
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 1.0e-11 74.7 120 35.8
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 1.7e-11 73.9 96 46.9
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 1.7e-11 73.9 131 36.6
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 2.2e-11 73.6 149 34.2
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 2.2e-11 73.6 54 66.7
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 3.8e-11 72.8 101 43.6
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 4.2e-10 69.3 131 36.6
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 1.2e-09 67.8 87 41.4
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 1.2e-09 67.8 87 41.4
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 2.1e-09 67.0 63 47.6
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 2.1e-09 67.0 63 47.6
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 2.7e-09 66.6 53 54.7
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 4.7e-09 65.9 99 38.4
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 4.7e-09 65.9 133 36.8
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 4.4e-07 59.3 68 47.1


User provided reference genes

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