Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 4.7e-135 484.6 250 100.0
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.0e-126 456.8 249 94.0
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 4.6e-106 388.3 233 82.0
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 1.2e-103 380.2 261 73.6
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 3.6e-103 378.6 250 75.6
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 4.7e-103 378.3 260 72.3
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 2.0e-101 372.9 240 77.9
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 3.7e-100 368.6 246 74.8
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 1.1e-99 367.1 254 74.0
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 2.4e-99 365.9 243 74.1
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 1.2e-98 363.6 231 76.2
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 1.2e-98 363.6 246 73.2
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 1.6e-98 363.2 230 76.5
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 2.7e-98 362.5 237 73.4
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 3.5e-98 362.1 238 72.3
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 7.8e-98 360.9 237 75.1
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 7.8e-98 360.9 252 73.8
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 1.7e-97 359.8 238 71.4
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 2.3e-97 359.4 261 70.1
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 2.3e-97 359.4 259 69.9
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 3.0e-97 359.0 237 75.1
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 3.9e-97 358.6 234 76.5
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.1e-96 357.1 237 73.8
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.5e-96 356.7 238 71.0
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 1.5e-96 356.7 238 73.1
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 1.5e-96 356.7 238 73.1
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 1.9e-96 356.3 231 73.2
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 3.3e-96 355.5 237 75.1
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 4.3e-96 355.1 244 69.3
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.1e-95 352.8 244 69.7
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.8e-95 352.4 238 72.3
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 6.2e-95 351.3 236 75.8
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 6.2e-95 351.3 250 71.6
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.8e-94 349.7 237 72.2
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 3.1e-94 349.0 244 70.5
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 3.1e-94 349.0 244 70.5
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 8.9e-94 347.4 249 68.7
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.2e-93 347.1 245 68.2
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.2e-93 347.1 250 69.6
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 1.5e-93 346.7 243 71.2
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 2.0e-93 346.3 250 68.4
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 2.6e-93 345.9 247 69.6
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 7.6e-93 344.4 250 71.2
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 2.2e-92 342.8 237 69.2
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 4.9e-92 341.7 227 75.8
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 4.9e-92 341.7 280 64.6
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 6.4e-92 341.3 227 75.8
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 3.2e-91 339.0 254 66.9
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 5.4e-91 338.2 251 68.5
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 5.4e-91 338.2 238 68.1
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 1.6e-90 336.7 251 70.9
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 2.1e-90 336.3 230 70.9
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 2.7e-90 335.9 249 69.1
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 3.5e-90 335.5 249 68.3
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 4.6e-90 335.1 236 72.0
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 4.6e-90 335.1 234 70.1
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 1.3e-89 333.6 245 68.6
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 2.3e-89 332.8 236 71.6
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 3.0e-89 332.4 236 70.3
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.1e-88 330.5 248 67.7
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 1.9e-88 329.7 243 67.1
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 4.3e-88 328.6 245 64.1
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 5.6e-88 328.2 248 67.3
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 5.6e-88 328.2 250 64.4
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 5.6e-88 328.2 230 68.7
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 7.3e-88 327.8 247 66.4
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 1.2e-87 327.0 247 64.4
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 2.1e-87 326.2 246 65.0
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 3.6e-87 325.5 230 67.8
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 6.2e-87 324.7 246 64.6
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 8.1e-87 324.3 246 65.0
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 1.4e-86 323.6 247 64.0
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 2.4e-86 322.8 248 65.3
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 3.1e-86 322.4 229 68.1
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 5.2e-86 321.6 244 65.2
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 8.9e-86 320.9 247 64.0
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 8.9e-86 320.9 232 66.4
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 1.2e-85 320.5 225 72.0
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 5.8e-85 318.2 206 74.3
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 1.7e-84 316.6 224 71.9
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 2.2e-84 316.2 197 76.6
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 2.9e-84 315.8 242 66.9
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 6.4e-84 314.7 224 70.1
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 8.4e-84 314.3 241 63.1
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 1.4e-83 313.5 250 63.6
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 1.4e-83 313.5 250 63.6
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 4.2e-83 312.0 242 65.7
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 1.3e-81 307.0 210 70.5
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.1e-80 303.9 245 62.4
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 1.9e-80 303.1 376 47.3
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 7.3e-80 301.2 214 68.2
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 2.1e-79 299.7 225 63.6
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 2.1e-79 299.7 246 62.6
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 6.9e-78 294.7 244 60.7
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.5e-77 293.5 246 59.3
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 9.9e-77 290.8 237 63.7
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 2.4e-62 243.0 194 61.9
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 4.5e-61 238.8 228 55.3
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 4.9e-60 235.3 228 55.3
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 9.3e-59 231.1 202 59.4
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 2.7e-58 229.6 220 52.7
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 5.1e-57 225.3 209 61.2
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.3e-52 210.7 151 72.8
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 2.2e-47 193.4 139 66.2
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 4.5e-45 185.7 231 45.5
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 3.9e-41 172.6 101 85.1
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 1.9e-35 153.7 101 73.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 7.9e-34 148.3 120 59.2
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.3e-28 131.0 95 76.8
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 9.4e-19 98.2 222 33.8
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 2.0e-08 63.9 180 29.4
Gohir.D02G037800 Gossypium hirsutum HOM05D001530 ORTHO05D003676 5.7e-08 62.4 205 27.3
Gorai.005G041700 Gossypium raimondii HOM05D001530 ORTHO05D003676 5.7e-08 62.4 205 27.3
TAR365G1025 Trochodendron aralioides HOM05D001530 ORTHO05D003676 1.3e-07 61.2 196 27.6
THA.LOC104801224 Tarenaya hassleriana HOM05D001530 ORTHO05D003676 1.7e-07 60.8 199 26.6
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 2.8e-07 60.1 159 27.0
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 2.8e-07 60.1 203 27.1
CSS0047387 Camellia sinensis var. sinensis HOM05D001530 ORTHO05D003676 6.3e-07 58.9 195 27.2
Pp3c25_4890 Physcomitrium patens HOM05D001530 ORTHO05D003676 6.3e-07 58.9 209 23.9
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 1.1e-06 58.2 193 25.9
AL1G12750 Arabidopsis lyrata HOM05D001530 ORTHO05D003676 1.4e-06 57.8 191 26.2
AT1G03260 Arabidopsis thaliana HOM05D001530 ORTHO05D003676 1.4e-06 57.8 191 26.2
Carub.0001s0237 Capsella rubella HOM05D001530 ORTHO05D003676 1.4e-06 57.8 189 26.5
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 1.8e-06 57.4 199 26.6
MELO3C021403.2 Cucumis melo HOM05D001530 ORTHO05D003676 2.4e-06 57.0 198 26.3
CsaV3_6G018580 Cucumis sativus L. HOM05D001530 ORTHO05D003676 2.4e-06 57.0 198 26.3
Potri.010G030800 Populus trichocarpa HOM05D001530 ORTHO05D003676 2.4e-06 57.0 206 27.2
Cfa006116 Carpinus fangiana HOM05D001530 ORTHO05D003676 3.1e-06 56.6 205 26.8
Thhalv10009966m.g Eutrema salsugineum HOM05D001530 ORTHO05D003676 3.1e-06 56.6 191 26.2
Os07g0655900 Oryza sativa ssp. japonica HOM05D001530 ORTHO05D003676 3.1e-06 56.6 205 25.4
MD03G1267800 Malus domestica HOM05D001530 ORTHO05D003676 4.1e-06 56.2 196 27.0
A09p68320 Brassica napus HOM05D001530 ORTHO05D003676 5.4e-06 55.8 191 25.7
BraA09t42168Z Brassica rapa HOM05D001530 ORTHO05D003676 5.4e-06 55.8 191 25.7
CANSAT78G1064 Cannabis sativa HOM05D001530 ORTHO05D003676 5.4e-06 55.8 202 28.2
Sp1g02260 Schrenkiella parvula HOM05D001530 ORTHO05D003676 7.0e-06 55.5 191 26.2
EL10Ac1g01265 Beta vulgaris HOM05D005243 ORTHO05D006670 9.2e-06 55.1 180 30.0
BcaC07g42263 Brassica carinata HOM05D001530 ORTHO05D003676 9.2e-06 55.1 191 25.1
C08p52880 Brassica napus HOM05D001530 ORTHO05D003676 9.2e-06 55.1 191 25.1
BolC8t52804H Brassica oleracea HOM05D001530 ORTHO05D003676 9.2e-06 55.1 191 25.1
FAN27G3491 Fragaria x ananassa HOM05D001530 ORTHO05D003676 9.2e-06 55.1 205 26.8


User provided reference genes

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