Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.1e-83 313.5 187 100.0
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.1e-79 299.3 187 94.1
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.0e-77 292.7 187 92.5
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 7.9e-71 270.8 188 87.2
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 5.0e-65 251.5 208 75.5
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.1e-63 246.1 193 73.6
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 5.7e-61 238.0 182 75.8
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.3e-60 236.9 187 70.1
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.8e-60 235.0 188 75.5
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.1e-59 233.8 187 67.9
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.1e-59 233.8 189 64.6
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.2e-50 203.8 228 59.2
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 4.5e-50 201.8 194 57.2
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 7.7e-50 201.1 204 64.7
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.3e-49 200.3 192 57.8
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 5.0e-49 198.4 193 55.4
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.1e-48 197.2 206 69.4
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.1e-48 197.2 208 59.1
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.5e-48 196.8 198 60.1
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.9e-48 196.4 188 60.1
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.9e-48 196.4 192 62.0
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 5.5e-48 194.9 203 67.0
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 9.4e-48 194.1 194 61.9
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 6.1e-47 191.4 204 63.7
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 8.0e-47 191.0 195 53.8
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.0e-46 190.7 191 61.8
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.0e-46 190.7 191 61.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.8e-46 189.9 195 59.0
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.8e-46 189.9 197 63.5
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.2e-46 188.3 201 55.7
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.5e-45 186.8 214 54.2
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.4e-45 185.7 201 59.2
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 4.4e-45 185.3 196 58.2
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 5.7e-45 184.9 201 64.2
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.3e-44 183.7 207 55.6
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.3e-44 183.7 217 53.0
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.3e-44 183.7 207 57.0
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.7e-44 183.3 209 56.9
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.2e-44 183.0 210 56.7
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.7e-44 182.2 207 60.4
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 8.3e-44 181.0 220 54.1
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.3e-44 181.0 194 56.7
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.1e-43 180.6 213 54.5
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.1e-43 180.6 187 57.8
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.1e-43 180.6 214 63.1
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 1.4e-43 180.3 218 55.5
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.8e-43 179.9 190 58.4
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.8e-43 179.9 223 52.5
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.4e-43 179.5 213 54.5
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 3.1e-43 179.1 207 64.3
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.6e-42 176.8 216 61.6
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 3.5e-42 175.6 211 53.6
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 4.5e-42 175.3 202 58.4
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 4.5e-42 175.3 206 52.9
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.3e-41 173.7 185 54.6
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.9e-41 172.6 197 54.8
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.8e-41 172.2 187 52.4
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 5.0e-41 171.8 200 65.0
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.6e-41 171.4 244 47.5
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.1e-40 170.6 203 55.2
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.9e-40 169.9 233 52.4
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.5e-40 169.5 204 52.9
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 4.3e-40 168.7 224 56.2
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.6e-40 168.3 191 52.4
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.8e-39 166.0 190 59.5
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.6e-39 165.6 186 46.8
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.7e-39 165.2 200 53.0
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 4.7e-39 165.2 197 46.7
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.8e-38 163.3 184 47.3
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.8e-38 163.3 208 59.1
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 2.3e-38 162.9 210 51.0
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 4.0e-38 162.2 203 52.2
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 2.0e-37 159.8 243 43.2
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.6e-37 159.5 209 53.6
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.6e-37 159.5 196 52.0
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 9.8e-37 157.5 190 47.4
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 2.2e-36 156.4 182 48.9
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.2e-36 156.4 125 68.0
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.1e-35 152.1 206 50.0
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 4.1e-35 152.1 196 51.5
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.6e-34 150.2 199 42.2
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.0e-34 149.8 194 52.1
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.7e-34 149.4 235 45.5
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 4.6e-34 148.7 189 58.2
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.9e-34 148.3 180 53.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 5.9e-34 148.3 199 50.3
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 5.9e-34 148.3 204 54.4
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-33 147.5 195 50.3
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-33 147.1 206 48.5
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.3e-33 147.1 196 55.6
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.3e-33 147.1 182 46.2
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.7e-33 146.7 191 51.8
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.3e-33 146.4 204 48.5
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.0e-33 146.0 192 50.5
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 3.0e-33 146.0 209 41.1
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.9e-33 145.6 207 53.1
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.9e-33 145.6 205 53.7
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 8.6e-33 144.4 205 48.8
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-32 143.7 211 46.9
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-32 143.7 211 46.9
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.5e-32 143.7 198 50.5
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-32 142.9 187 51.3
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 3.3e-32 142.5 187 50.8
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 4.3e-32 142.1 195 60.0
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 5.6e-32 141.7 217 46.5
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 5.6e-32 141.7 193 51.8
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 7.3e-32 141.4 188 50.5
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 9.5e-32 141.0 211 40.8
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-31 140.6 187 50.3
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-31 140.6 187 50.3
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 2.1e-31 139.8 200 48.5
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-31 139.4 205 47.8
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.6e-31 139.0 226 40.3
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 3.6e-31 139.0 195 43.6
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 6.2e-31 138.3 240 40.0
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-30 137.5 205 46.8
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.0e-30 137.5 211 54.0
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-30 137.1 188 41.5
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.8e-30 136.7 182 52.7
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 2.3e-30 136.3 195 46.7
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 4.0e-30 135.6 193 44.6
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 4.0e-30 135.6 206 46.1
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 8.9e-30 134.4 206 52.4
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.2e-29 134.0 143 52.4
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.5e-29 133.7 235 37.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 3.4e-29 132.5 184 48.9
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 5.8e-29 131.7 188 41.5
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 5.8e-29 131.7 188 41.5
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.7e-28 130.2 218 45.0
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 2.2e-28 129.8 182 45.6
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 2.9e-28 129.4 224 43.3
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.9e-28 129.4 219 53.9
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 4.9e-28 128.6 194 46.4
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-27 127.1 193 42.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.4e-27 126.3 199 43.2
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.4e-27 126.3 202 44.6
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 3.2e-27 125.9 216 36.1
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 7.0e-27 124.8 219 44.3
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 7.0e-27 124.8 209 37.8
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-26 122.9 134 48.5
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 7.8e-26 121.3 203 44.3
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-25 120.6 193 42.5
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-25 120.6 217 39.6
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.3e-25 120.6 190 45.3
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.7e-25 120.2 203 44.3
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 2.3e-25 119.8 213 34.3
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.9e-25 119.0 193 45.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 6.6e-25 118.2 184 45.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 8.6e-25 117.9 179 44.7
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-24 116.3 193 41.5
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-24 116.3 188 39.9
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-24 116.3 189 41.8
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-24 116.3 188 39.9
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 2.5e-24 116.3 188 39.9
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.3e-20 104.0 178 34.8
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.7e-20 103.6 197 42.6
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.2e-20 103.2 130 50.0
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-20 103.2 130 50.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-20 102.8 130 50.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.9e-20 102.8 130 50.0
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.9e-20 102.1 197 42.1
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 8.3e-20 101.3 119 67.2
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.1e-19 100.9 197 41.6
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.1e-19 100.9 219 32.4
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 9.2e-19 97.8 111 49.5
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.5e-16 89.7 158 40.5
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.8e-14 83.6 130 44.6
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.4e-13 79.3 118 39.0
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 9.9e-13 77.8 118 38.1
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.4e-11 73.2 107 51.4
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.2e-10 70.9 124 32.3
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 2.1e-10 70.1 116 35.3
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 3.5e-10 69.3 44 63.6
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.9e-08 63.5 35 74.3
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 3.3e-08 62.8 74 75.7
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 5.6e-08 62.0 119 30.3
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 9.6e-08 61.2 123 31.7
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 3.6e-07 59.3 139 30.2
SEGI_34313 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 3.6e-07 59.3 113 31.9
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 4.7e-07 58.9 143 29.4
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 6.2e-07 58.5 115 29.6
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 1.1e-06 57.8 29 86.2
Ca_06512_v3 Cicer arietinum L. HOM05D003968 ORTHO05D004077 1.8e-06 57.0 95 53.7
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 3.1e-06 56.2 104 30.8
SEGI_09126 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 4.0e-06 55.8 104 30.8
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 6.8e-06 55.1 134 28.4


User provided reference genes

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