Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 5.0e-194 681.0 368 100.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 6.7e-138 494.6 284 95.8
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 3.0e-130 469.2 289 89.6
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 8.2e-128 461.1 284 90.5
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.4e-127 459.5 285 88.1
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 7.6e-126 454.5 285 88.8
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.4e-124 450.3 285 87.0
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 2.1e-123 446.4 285 86.3
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.1e-123 446.4 285 86.7
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 2.7e-123 446.0 285 88.1
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.3e-122 443.0 287 86.1
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.5e-121 440.3 285 85.6
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 7.4e-121 438.0 296 83.1
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 7.4e-121 438.0 285 84.6
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 7.4e-121 438.0 285 84.6
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 9.7e-121 437.6 240 86.2
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.2e-120 436.4 285 84.6
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 3.7e-120 435.6 285 86.7
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 3.7e-120 435.6 285 85.6
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 8.2e-120 434.5 285 83.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.4e-119 433.7 285 84.9
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.8e-119 433.3 285 84.9
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 2.4e-119 433.0 306 81.4
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 2.4e-119 433.0 285 84.2
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 4.1e-119 432.2 289 83.0
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.2e-118 430.6 285 83.9
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.9e-118 428.3 285 85.6
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.9e-118 428.3 287 81.9
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.9e-118 428.3 287 81.2
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 7.6e-118 427.9 285 82.5
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.3e-117 427.2 285 83.5
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.3e-117 427.2 285 83.5
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.7e-117 426.8 286 84.6
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.9e-117 426.0 285 82.5
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.9e-117 426.0 287 80.8
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.0e-117 425.2 287 81.5
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 8.5e-117 424.5 266 88.0
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.1e-116 424.1 285 83.5
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.1e-116 424.1 287 82.6
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 3.2e-116 422.5 285 84.6
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 3.2e-116 422.5 286 82.2
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.6e-115 418.7 286 83.2
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.1e-115 418.3 288 83.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.1e-113 414.1 286 82.5
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.5e-113 412.9 285 80.4
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.3e-113 412.5 285 80.4
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 9.7e-113 411.0 285 80.4
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.8e-112 409.5 285 81.4
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.3e-111 405.2 285 81.4
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.2e-110 404.1 285 81.8
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 7.7e-110 401.4 240 78.8
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.2e-109 399.8 285 80.0
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.9e-109 399.4 323 72.8
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 5.0e-109 398.7 289 80.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 5.0e-109 398.7 285 80.0
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.2e-108 396.0 285 80.0
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 5.5e-108 395.2 314 75.5
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 5.5e-108 395.2 285 80.0
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 7.2e-108 394.8 287 78.0
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.6e-107 393.7 285 80.0
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.6e-107 393.7 283 80.2
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 2.7e-107 392.9 286 79.0
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 6.1e-107 391.7 287 79.8
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 3.9e-106 389.0 284 78.9
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 3.9e-106 389.0 287 77.7
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-105 387.5 285 78.9
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.0e-105 386.7 285 77.9
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.3e-105 386.0 285 76.5
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 5.7e-105 385.2 288 77.8
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 7.4e-105 384.8 288 78.1
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.2e-104 383.3 231 79.2
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.1e-103 380.9 242 78.1
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.1e-103 379.0 292 77.7
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.2e-102 377.5 292 77.4
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.0e-102 376.7 287 73.9
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 4.5e-102 375.6 245 75.1
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.0e-101 374.4 243 74.5
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.0e-101 374.4 289 75.4
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.3e-101 374.0 285 76.8
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.9e-101 372.9 241 74.7
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.4e-100 370.5 210 85.2
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 1.9e-100 370.2 244 74.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 3.2e-100 369.4 287 75.6
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.2e-99 367.5 288 75.3
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.1e-99 366.7 245 74.7
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.7e-99 366.3 275 67.6
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.7e-99 366.3 287 74.9
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 3.6e-99 365.9 244 73.8
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 8.0e-99 364.8 353 65.2
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.0e-98 364.4 286 72.0
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.0e-98 364.4 344 65.1
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.4e-98 364.0 241 74.3
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 1.4e-98 364.0 286 72.0
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 8.2e-96 354.8 211 79.6
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.4e-95 354.0 285 74.0
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 2.4e-95 353.2 285 73.3
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 7.0e-95 351.7 271 77.9
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.6e-94 350.5 272 75.4
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 7.7e-94 348.2 289 74.0
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 2.9e-93 346.3 234 70.1
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 7.2e-92 341.7 285 71.2
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 9.4e-92 341.3 292 72.9
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 8.0e-91 338.2 222 70.7
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 5.2e-90 335.5 285 71.9
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 6.7e-90 335.1 239 68.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.3e-89 332.8 242 80.6
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 8.2e-88 328.2 230 83.9
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 5.3e-87 325.5 250 69.6
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 2.0e-86 323.6 239 68.2
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.7e-86 323.2 293 70.6
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 3.5e-86 322.8 334 64.4
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.2e-85 320.1 334 64.1
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.9e-84 317.0 245 68.2
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.9e-84 317.0 285 69.5
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.5e-84 316.6 247 68.8
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 2.7e-83 313.2 355 60.0
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 2.7e-83 313.2 357 59.9
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.7e-83 313.2 250 68.0
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 5.2e-82 308.9 229 70.7
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 6.8e-82 308.5 287 68.3
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 3.4e-81 306.2 198 77.8
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 3.7e-80 302.8 240 65.4
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 2.8e-75 286.6 197 71.6
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.7e-75 285.8 229 75.1
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 3.1e-71 273.1 244 59.8
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.6e-70 270.8 217 65.0
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.0e-70 270.4 238 61.3
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 4.7e-67 259.2 245 59.2
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.8e-66 257.3 300 58.7
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 7.5e-65 251.9 200 64.0
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 5.2e-58 229.2 246 52.0
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 6.8e-50 202.2 201 52.7
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 3.7e-48 196.4 268 57.8
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 4.3e-44 183.0 131 69.5
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.6e-36 156.0 237 42.6
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 8.1e-35 152.1 247 42.1
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.2e-32 144.1 247 39.3
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 9.3e-31 138.7 236 39.4
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 8.7e-29 132.1 184 47.8
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.3e-27 128.3 226 38.9
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.3e-27 128.3 225 36.9
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.1e-27 125.6 229 36.7
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.1e-26 125.2 228 39.0
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 2.6e-25 120.6 230 37.4
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.5e-25 119.8 243 37.4
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 7.6e-25 119.0 238 37.0
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.2e-24 117.5 231 36.8
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 4.9e-24 116.3 235 34.0
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.1e-23 115.2 227 35.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 5.4e-23 112.8 256 35.2
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.2e-22 111.7 53 96.2
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.6e-22 111.3 248 33.1
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.7e-22 110.5 231 35.9
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.5e-22 110.2 224 34.8
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 7.9e-22 109.0 230 35.2
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 3.9e-21 106.7 231 35.9
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.1e-21 106.3 209 35.9
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 5.8e-17 92.8 244 32.4
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.7e-16 91.3 205 34.1
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.2e-16 90.9 209 35.4
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 2.9e-16 90.5 56 73.2
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 6.4e-16 89.4 243 33.3
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 9.3e-15 85.5 46 82.6
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 4.6e-14 83.2 54 66.7
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.3e-13 81.6 172 34.3
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 8.7e-13 79.0 188 34.0
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.1e-12 78.6 103 44.7
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 4.3e-12 76.6 150 36.0
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 7.4e-12 75.9 253 26.9
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.8e-10 71.2 168 33.3
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 2.0e-09 67.8 51 56.9
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.5e-09 66.6 52 53.8
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 5.8e-09 66.2 48 58.3
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.8e-08 63.5 37 67.6
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 1.2e-06 58.5 58 44.8


User provided reference genes

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