Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0026300 Salix brachista HOM05D002570 ORTHO05D002689 3.6e-38 161.0 76 100.0
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.6e-30 134.4 66 95.5
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 3.4e-28 127.9 66 92.4
Potri.003G187500 Populus trichocarpa HOM05D002570 ORTHO05D002689 9.8e-28 126.3 66 90.9
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 3.2e-26 121.3 66 83.3
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 4.1e-26 120.9 65 84.6
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 7.0e-26 120.2 65 81.5
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 7.0e-26 120.2 65 81.5
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 9.2e-26 119.8 76 73.7
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 2.7e-25 118.2 66 81.8
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 2.7e-25 118.2 67 85.1
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 6.0e-25 117.1 66 80.3
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 6.6e-24 113.6 67 79.1
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 1.5e-23 112.5 66 77.3
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 3.3e-23 111.3 68 76.5
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 3.3e-23 111.3 65 72.3
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 3.3e-23 111.3 66 71.2
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 4.3e-23 110.9 65 73.8
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 7.3e-23 110.2 66 74.2
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.2e-22 109.4 69 75.4
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 1.6e-22 109.0 67 76.1
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 1.6e-22 109.0 67 76.1
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 1.6e-22 109.0 65 70.8
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 2.1e-22 108.6 68 73.5
DCAR_016323 Daucus carota HOM05D002570 ORTHO05D002689 4.7e-22 107.5 66 69.7
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 4.7e-22 107.5 65 73.8
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.1e-21 106.3 65 69.2
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.1e-21 106.3 65 69.2
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 1.8e-21 105.5 64 73.4
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 1.8e-21 105.5 67 73.1
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 3.1e-21 104.8 67 74.6
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 3.1e-21 104.8 65 73.8
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 4.0e-21 104.4 65 73.8
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 5.2e-21 104.0 65 66.2
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 1.5e-20 102.4 58 77.6
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 2.0e-20 102.1 66 69.7
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.0e-20 102.1 78 62.8
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.6e-20 101.7 79 63.3
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 4.4e-20 100.9 63 73.0
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 5.8e-20 100.5 67 71.6
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 7.5e-20 100.1 70 77.1
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 9.9e-20 99.8 65 69.2
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.3e-19 99.4 59 79.7
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.9e-19 98.2 70 75.7
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.9e-19 98.2 70 75.7
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 6.4e-19 97.1 63 77.8
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 6.4e-19 97.1 67 70.1
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 6.4e-19 97.1 67 70.1
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 6.4e-19 97.1 67 68.7
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 1.4e-18 95.9 67 68.7
Lj3g0010275 Lotus japonicus HOM05D002570 ORTHO05D002689 5.4e-18 94.0 62 71.0
Medtr2g105430 Medicago truncatula HOM05D002570 ORTHO05D002689 5.4e-18 94.0 68 66.2
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 5.4e-18 94.0 70 67.1
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 7.1e-18 93.6 81 60.5
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 9.2e-18 93.2 80 60.0
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.2e-17 92.8 69 66.7
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.2e-17 92.8 69 66.7
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 1.2e-17 92.8 67 68.7
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 1.6e-17 92.4 69 66.7
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.6e-17 92.4 69 66.7
HanXRQChr04g0099961 Helianthus annuus HOM05D002570 ORTHO05D002689 1.6e-17 92.4 67 61.2
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 2.7e-17 91.7 68 63.2
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 4.6e-17 90.9 65 64.6
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 6.0e-17 90.5 69 65.2
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 6.0e-17 90.5 65 60.0
Nitab4.5_0004576g0010 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.7e-16 89.0 69 63.8
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.7e-16 89.0 67 65.7
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 2.3e-16 88.6 65 63.1
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 3.0e-16 88.2 67 55.2
CsaV3_3G032640 Cucumis sativus L. HOM05D002570 ORTHO05D002689 3.9e-16 87.8 57 66.7
Nitab4.5_0007120g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.9e-16 87.8 65 63.1
CiPaw.02G024300 Carya illinoinensis HOM05D002570 ORTHO05D002689 5.1e-16 87.4 64 67.2
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.1e-15 86.3 66 63.6
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 1.9e-15 85.5 58 63.8
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 2.5e-15 85.1 52 71.2
MELO3C028978.2 Cucumis melo HOM05D002570 ORTHO05D002689 5.6e-15 84.0 58 63.8
Nitab4.5_0007120g0040 Nicotiana tabacum HOM05D002570 ORTHO05D002689 5.6e-15 84.0 66 62.1
Oeu036442.1 Olea europaea HOM05D002570 ORTHO05D002689 6.2e-14 80.5 63 58.7
CANSAT64G2315 Cannabis sativa HOM05D002570 ORTHO05D002689 2.4e-13 78.6 63 60.3
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 6.8e-13 77.0 53 58.5
Lalb_Chr24g0392771 Lupinus albus HOM05D002570 ORTHO05D002689 1.2e-12 76.3 47 70.2
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 2.0e-12 75.5 65 56.9
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 2.0e-12 75.5 59 50.8
TAR381G1276 Trochodendron aralioides HOM05D001633 ORTHO05D002880 2.0e-12 75.5 59 50.8
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 2.6e-12 75.1 65 56.9
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 4.4e-12 74.3 55 60.0
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 4.4e-12 74.3 66 56.1
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 5.8e-12 73.9 48 66.7
Psat5g308160 Pisum sativum HOM05D002570 ORTHO05D002689 5.8e-12 73.9 66 54.5
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 2.2e-11 72.0 45 68.9
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 2.9e-11 71.6 60 53.3
SEGI_16988 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 2.9e-11 71.6 53 56.6
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 3.8e-11 71.2 58 50.0
Nn5g30532 Nelumbo nucifera HOM05D002570 ORTHO05D002689 4.9e-11 70.9 60 50.0
Hma1.2p1_0177F.1_g077950 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 8.4e-11 70.1 57 54.4
SEGI_30481 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 8.4e-11 70.1 55 54.5
Manes.05G180500 Manihot esculenta HOM05D002570 ORTHO05D002689 1.4e-10 69.3 55 56.4
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 1.4e-10 69.3 55 56.4
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.4e-10 69.3 58 50.0
arahy.Tifrunner.gnm1.ann1.Z5UTBB Arachis hypogaea HOM05D002570 ORTHO05D002689 1.9e-10 68.9 50 64.0
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 1.9e-10 68.9 69 50.7
Atru.chr13.811 Acer truncatum HOM05D002570 ORTHO05D002689 4.1e-10 67.8 58 48.3
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 4.1e-10 67.8 58 50.0
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 5.4e-10 67.4 58 50.0
Manes.18G044800 Manihot esculenta HOM05D002570 ORTHO05D002689 9.2e-10 66.6 55 52.7
PGSC0003DMG400028926 Solanum tuberosum HOM05D002570 ORTHO05D002689 4.6e-09 64.3 41 70.7
MBI16_g22819_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 6.0e-09 63.9 52 50.0
TWI56G1429 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 6.0e-09 63.9 53 49.1
ECA247G0437 Erigeron canadensis HOM05D005398 ORTHO05D000476 7.8e-09 63.5 41 73.2
Eucgr.F00117 Eucalyptus grandis HOM05D002570 ORTHO05D002689 7.8e-09 63.5 55 49.1
Lj2g0012585 Lotus japonicus HOM05D002570 ORTHO05D002689 7.8e-09 63.5 57 47.4
Thecc.08G091100 Theobroma cacao HOM05D002570 ORTHO05D002689 7.8e-09 63.5 58 50.0
Sed0024363 Sechium edule HOM05D002570 ORTHO05D002689 1.0e-08 63.2 56 48.2
Solyc06g068620.3 Solanum lycopersicum HOM05D002570 ORTHO05D002689 1.0e-08 63.2 41 68.3
Sopen06g025880 Solanum pennellii HOM05D002570 ORTHO05D002689 1.0e-08 63.2 41 68.3
CAN.G1089.3 Capsicum annuum HOM05D002570 ORTHO05D002689 1.3e-08 62.8 42 66.7
MELO3C032377.2 Cucumis melo HOM05D002570 ORTHO05D002689 1.3e-08 62.8 57 49.1
Gohir.D02G089132 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.3e-08 62.8 63 46.0
Duzib116G0240 Durio zibethinus HOM05D002570 ORTHO05D002689 1.7e-08 62.4 56 50.0
PGR083G0844 Punica granatum HOM05D002570 ORTHO05D002689 1.7e-08 62.4 56 50.0
Rhsim07G0221300 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.7e-08 62.4 55 49.1
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 1.7e-08 62.4 63 46.0
CiPaw.07G176800 Carya illinoinensis HOM05D002570 ORTHO05D002689 3.0e-08 61.6 58 51.7
CDE02G3789 Ceratophyllum demersum HOM05D002570 ORTHO05D002689 3.0e-08 61.6 48 56.2
Duzib251G0386 Durio zibethinus HOM05D002570 ORTHO05D002689 3.0e-08 61.6 80 42.5
Sc05g0001400 Simmondsia chinensis HOM05D002570 ORTHO05D002689 3.0e-08 61.6 56 42.9
Gohir.A02G081500 Gossypium hirsutum HOM05D002570 ORTHO05D002689 3.9e-08 61.2 63 44.4
Gorai.005G099800 Gossypium raimondii HOM05D002570 ORTHO05D002689 3.9e-08 61.2 63 44.4
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 3.9e-08 61.2 54 55.6
ATR0030G054 Amborella trichopoda HOM05D002570 ORTHO05D002689 5.1e-08 60.8 66 42.4
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 5.1e-08 60.8 53 47.2
vmacro22064 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 5.1e-08 60.8 55 47.3
CDE05G0297 Ceratophyllum demersum HOM05D002570 ORTHO05D002689 8.7e-08 60.1 48 56.2
Hma1.2p1_0235F.1_g098980 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 8.7e-08 60.1 66 48.5
Lj3g0002113 Lotus japonicus HOM05D002570 ORTHO05D002689 8.7e-08 60.1 32 81.2
Sabra02G0094200 Salix brachista HOM05D002570 ORTHO05D002689 8.7e-08 60.1 54 46.3
vmacro21448 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.1e-07 59.7 58 44.8
HPP92_026648 Vanilla planifolia HOM05D002570 ORTHO05D002689 1.1e-07 59.7 66 43.9
Potri.002G119700 Populus trichocarpa HOM05D002570 ORTHO05D002689 1.5e-07 59.3 59 44.1
HPP92_015713 Vanilla planifolia HOM05D002570 ORTHO05D002689 1.5e-07 59.3 66 43.9
Glyma.19G015500 Glycine max HOM05D002570 ORTHO05D002689 1.9e-07 58.9 59 49.2
Os04g0603400 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 1.9e-07 58.9 58 50.0
Zm00001eb067680 Zea mays HOM05D002570 ORTHO05D002689 1.9e-07 58.9 48 58.3
Ciclev10002925m.g Citrus clementina HOM05D002570 ORTHO05D002689 4.3e-07 57.8 52 51.9
Lalb_Chr14g0376161 Lupinus albus HOM05D002570 ORTHO05D002689 5.6e-07 57.4 31 77.4
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 7.3e-07 57.0 58 46.6
Duzib041G0717 Durio zibethinus HOM05D002570 ORTHO05D002689 7.3e-07 57.0 55 54.5
Migut.N02768 Erythranthe guttata HOM05D002570 ORTHO05D002689 7.3e-07 57.0 59 42.4
Peaxi162Scf00207g00335 Petunia axillaris HOM05D002570 ORTHO05D002689 7.3e-07 57.0 40 60.0
Hund09510 Selenicereus undatus HOM05D002570 ORTHO05D002689 7.3e-07 57.0 64 39.1
SEGI_02946 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 9.6e-07 56.6 49 46.9
Sc02g0007790 Simmondsia chinensis HOM05D002570 ORTHO05D002689 9.6e-07 56.6 55 43.6
SalBow7G3896 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.2e-06 56.2 52 46.2
Gohir.D05G211800 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.6e-06 55.8 54 48.1
Os04g0658200 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 1.6e-06 55.8 40 60.0
TPR.G32582 Trifolium pratense HOM05D002570 ORTHO05D002689 1.6e-06 55.8 69 42.0
TWI60G0727 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 1.6e-06 55.8 69 42.0
Aqoxy5G00897 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 2.8e-06 55.1 44 56.8
Gohir.A05G208300 Gossypium hirsutum HOM05D002570 ORTHO05D002689 3.6e-06 54.7 55 47.3
Medtr6g008680 Medicago truncatula HOM05D002570 ORTHO05D002689 3.6e-06 54.7 70 42.9
Nitab4.5_0000934g0050 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.6e-06 54.7 57 42.1
Nitab4.5_0011511g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.6e-06 54.7 57 42.1
Sc10g0008480 Simmondsia chinensis HOM05D002570 ORTHO05D002689 3.6e-06 54.7 40 52.5
Aqoxy6G02718 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 4.7e-06 54.3 56 33.9
COL.COLO4_28527 Corchorus olitorius HOM05D002570 ORTHO05D002689 4.7e-06 54.3 52 44.2
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 4.7e-06 54.3 67 47.8
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 4.7e-06 54.3 35 68.6
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 4.7e-06 54.3 35 68.6
Cfa013397 Carpinus fangiana HOM05D002570 ORTHO05D002689 6.2e-06 53.9 60 43.3
Gorai.009G218400 Gossypium raimondii HOM05D002570 ORTHO05D002689 6.2e-06 53.9 51 49.0
Zm00001eb071700 Zea mays HOM05D002570 ORTHO05D002689 6.2e-06 53.9 54 50.0
PGSC0003DMG400021530 Solanum tuberosum HOM05D002570 ORTHO05D002689 8.1e-06 53.5 53 43.4


User provided reference genes

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