Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 7.4e-253 876.7 437 100.0
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 2.3e-238 828.6 437 94.5
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.1e-199 699.1 429 78.3
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 6.0e-194 681.0 431 78.2
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 5.2e-190 667.9 434 75.8
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 3.7e-188 661.8 432 74.1
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 6.4e-188 661.0 420 76.4
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.4e-187 659.8 422 75.1
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.4e-187 659.8 420 76.4
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.9e-187 659.4 439 73.6
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.9e-187 659.4 439 73.6
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 6.0e-186 654.4 438 74.0
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.8e-186 654.1 420 75.2
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 1.0e-185 653.7 436 73.6
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 3.9e-185 651.7 437 73.9
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.5e-184 649.8 416 75.5
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 3.3e-184 648.7 439 72.9
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 5.6e-184 647.9 437 73.7
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.6e-183 646.4 441 73.5
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.8e-183 645.6 426 73.7
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 3.6e-183 645.2 437 73.7
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 4.7e-183 644.8 476 68.5
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.1e-183 644.0 431 72.6
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.1e-182 643.7 439 72.2
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.8e-182 642.9 424 71.7
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 4.0e-182 641.7 424 74.3
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 5.2e-182 641.3 423 74.0
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 6.8e-182 641.0 429 72.3
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.2e-181 640.2 437 73.9
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 2.9e-180 635.6 423 72.8
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 2.9e-180 635.6 437 70.5
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 3.7e-180 635.2 439 71.5
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 6.4e-180 634.4 428 72.7
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.4e-179 633.3 446 70.4
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 2.4e-179 632.5 437 72.5
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 4.1e-179 631.7 439 71.3
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 5.4e-179 631.3 425 72.5
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 7.1e-179 630.9 456 68.0
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 1.6e-178 629.8 428 72.2
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 1.6e-178 629.8 439 71.3
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 3.5e-178 628.6 430 70.0
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 4.6e-178 628.2 422 71.3
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.8e-178 627.5 433 69.5
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.8e-178 627.5 433 69.5
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 7.8e-178 627.5 433 69.3
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.0e-177 627.1 426 70.2
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.3e-177 626.7 464 69.0
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.3e-177 626.7 429 71.3
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.3e-177 625.9 436 70.4
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 3.0e-177 625.5 424 71.9
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 5.1e-177 624.8 422 72.5
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.1e-176 623.6 446 69.1
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.5e-176 623.2 424 71.7
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.9e-176 622.9 432 69.2
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.9e-176 622.9 435 69.4
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.9e-176 622.9 431 68.9
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 3.3e-176 622.1 441 71.0
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.3e-176 621.7 418 70.8
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 5.6e-176 621.3 422 69.9
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 5.6e-176 621.3 422 72.3
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 9.5e-176 620.5 437 70.0
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.1e-175 619.4 418 70.6
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 2.1e-175 619.4 434 71.9
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 6.2e-175 617.8 439 68.1
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.1e-174 615.5 418 70.3
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.1e-174 615.5 423 71.2
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 6.8e-174 614.4 420 72.4
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.2e-173 613.6 420 71.7
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.2e-173 613.6 400 74.8
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 2.2e-172 609.4 435 68.0
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 1.9e-171 606.3 478 65.1
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 9.2e-171 604.0 496 63.1
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 4.6e-170 601.7 423 69.5
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.0e-169 600.5 427 67.7
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 3.9e-169 598.6 394 72.1
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.5e-168 595.9 449 66.4
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.3e-168 595.1 441 68.0
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.6e-167 593.2 438 67.1
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 6.4e-164 581.3 418 71.3
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 3.2e-163 578.9 420 66.4
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 3.2e-163 578.9 410 71.2
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.1e-160 570.5 422 68.5
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-155 553.9 418 65.3
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.6e-154 550.1 447 61.3
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.1e-154 549.7 380 68.7
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 3.9e-153 545.4 413 66.1
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 5.1e-153 545.0 437 64.8
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.5e-152 542.7 411 66.7
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 2.3e-145 519.6 385 65.7
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 1.3e-143 513.8 411 64.7
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 4.5e-141 505.4 328 77.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.4e-139 500.4 340 73.5
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 9.3e-139 497.7 370 65.4
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 4.6e-138 495.4 421 60.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.1e-137 491.9 417 61.4
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.2e-133 480.7 335 71.9
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 3.4e-133 479.2 418 57.9
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 4.5e-133 478.8 333 72.1
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 2.5e-131 473.0 351 65.2
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 7.9e-130 468.0 421 55.6
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 5.1e-129 465.3 344 67.4
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 3.1e-126 456.1 342 68.1
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.3e-124 450.7 444 55.0
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.6e-122 443.7 324 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 6.1e-122 441.8 415 54.5
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.4e-118 429.9 417 53.0
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 6.5e-116 421.8 407 53.6
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.8e-113 413.7 347 63.7
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 3.0e-113 412.9 312 65.4
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.4e-110 403.3 437 51.9
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.3e-108 397.5 580 39.3
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 6.8e-105 385.2 373 56.6
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.6e-104 383.3 285 67.4
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 9.7e-104 381.3 277 70.0
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 1.8e-102 377.1 289 64.0
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 2.4e-94 350.1 427 49.6
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.1e-94 349.4 245 69.8
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.9e-91 340.5 270 61.1
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 6.3e-87 325.5 421 44.2
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 4.6e-85 319.3 215 70.2
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 1.7e-84 317.4 428 44.4
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.9e-84 316.6 432 41.0
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 7.3e-83 312.0 234 66.2
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 4.7e-82 309.3 354 50.3
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.2e-77 294.7 404 43.3
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 4.1e-70 269.6 218 62.8
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 3.0e-68 263.5 229 56.8
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 6.6e-68 262.3 472 35.2
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 2.6e-64 250.4 149 76.5
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.4e-64 249.6 363 41.3
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.3e-63 248.1 201 63.7
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 3.7e-63 246.5 158 74.1
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.7e-63 246.5 152 75.7
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 1.8e-57 227.6 418 36.8
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 7.6e-56 222.2 181 64.6
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.8e-55 219.9 148 69.6
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 1.2e-53 214.9 404 35.4
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.1e-53 214.2 148 73.0
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 7.8e-53 212.2 142 69.0
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 1.0e-52 211.8 258 51.2
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 3.5e-45 186.8 118 74.6
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 2.3e-44 184.1 111 80.2
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 1.3e-31 141.7 131 65.6
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.9e-29 132.5 84 72.6
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.9e-29 132.5 84 72.6
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 3.0e-28 130.6 96 63.5
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 5.9e-24 116.3 434 26.3
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.1e-21 107.8 62 79.0
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 5.7e-19 99.8 330 29.1
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-18 98.6 108 55.6
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 5.5e-14 83.2 60 66.7
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 6.7e-12 76.3 78 50.0
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 7.4e-11 72.8 53 69.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 7.4e-11 72.8 52 61.5
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 2.2e-10 71.2 44 61.4
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 4.8e-10 70.1 53 64.2
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 8.2e-10 69.3 111 38.7
SHI43370 Sapria himalayana HOM05D004598 ORTHO05D005550 2.9e-07 60.8 86 48.8
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-06 58.9 101 35.6


User provided reference genes

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