Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 3.6e-67 258.5 166 100.0
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 1.1e-58 230.3 169 82.8
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 3.9e-53 211.8 174 70.7
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 7.9e-30 134.4 165 52.1
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 1.0e-29 134.0 173 52.6
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 6.7e-29 131.3 172 50.6
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 8.7e-29 131.0 168 50.6
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 3.3e-28 129.0 168 57.7
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 8.2e-27 124.4 169 57.4
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 1.1e-26 124.0 167 50.3
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 5.3e-26 121.7 177 49.2
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 6.9e-26 121.3 168 54.8
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 9.0e-26 120.9 174 48.3
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 9.0e-26 120.9 112 60.7
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.2e-25 120.6 106 65.1
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 1.5e-25 120.2 174 47.7
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 1.5e-25 120.2 107 64.5
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 2.0e-25 119.8 176 47.7
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 2.6e-25 119.4 170 46.5
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 3.4e-25 119.0 181 45.9
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 1.0e-24 117.5 169 46.7
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 1.3e-24 117.1 166 59.0
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 1.7e-24 116.7 167 47.3
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 3.8e-24 115.5 100 63.0
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 5.0e-24 115.2 183 44.3
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 1.1e-23 114.0 100 63.0
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 1.4e-23 113.6 167 52.7
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 1.4e-23 113.6 162 56.2
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 1.9e-23 113.2 178 48.3
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 2.5e-23 112.8 169 46.7
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 2.5e-23 112.8 106 58.5
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 3.2e-23 112.5 171 48.0
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 3.2e-23 112.5 104 59.6
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 4.2e-23 112.1 170 47.1
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 5.5e-23 111.7 168 48.2
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 5.5e-23 111.7 170 45.3
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 7.1e-23 111.3 96 62.5
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 7.1e-23 111.3 96 62.5
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 1.2e-22 110.5 160 46.2
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 1.6e-22 110.2 174 47.7
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 2.1e-22 109.8 103 61.2
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 2.1e-22 109.8 95 63.2
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 3.5e-22 109.0 162 47.5
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 3.5e-22 109.0 95 64.2
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 6.1e-22 108.2 101 60.4
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 6.1e-22 108.2 95 63.2
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 7.9e-22 107.8 95 62.1
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 1.0e-21 107.5 160 45.6
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 1.3e-21 107.1 108 59.3
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 2.3e-21 106.3 177 44.1
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 3.0e-21 105.9 104 58.7
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 3.9e-21 105.5 101 59.4
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 5.1e-21 105.1 171 42.7
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 6.7e-21 104.8 189 42.3
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 6.7e-21 104.8 169 47.3
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 8.7e-21 104.4 96 59.4
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 1.1e-20 104.0 197 41.1
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 1.5e-20 103.6 157 44.6
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 2.5e-20 102.8 168 42.9
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 2.5e-20 102.8 161 45.3
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 4.3e-20 102.1 103 55.3
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 9.7e-20 100.9 183 42.6
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 9.7e-20 100.9 161 45.3
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.3e-19 100.5 172 44.2
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 1.3e-19 100.5 164 43.9
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 1.3e-19 100.5 103 56.3
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 1.6e-19 100.1 182 42.3
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 2.8e-19 99.4 182 41.8
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 4.8e-19 98.6 161 44.1
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 8.2e-19 97.8 102 53.9
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 8.2e-19 97.8 167 43.1
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 8.2e-19 97.8 179 41.9
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 8.2e-19 97.8 179 41.9
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 8.2e-19 97.8 118 55.1
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 1.1e-18 97.4 108 54.6
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 1.4e-18 97.1 180 42.2
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 2.4e-18 96.3 167 49.1
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 2.4e-18 96.3 179 41.3
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 3.1e-18 95.9 149 42.3
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 3.1e-18 95.9 130 46.9
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 3.4e-17 92.4 167 41.9
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 4.5e-17 92.0 97 58.8
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.7e-16 90.1 183 37.7
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 2.9e-16 89.4 140 45.0
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 3.8e-16 89.0 95 58.9
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 5.0e-16 88.6 181 37.6
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 6.5e-16 88.2 163 42.3
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 8.5e-16 87.8 149 42.3
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 2.5e-15 86.3 108 49.1
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 5.5e-15 85.1 87 60.9
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 5.5e-15 85.1 152 42.1
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 2.1e-14 83.2 151 56.3
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 2.7e-14 82.8 100 52.0
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 3.6e-14 82.4 156 42.9
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 6.1e-14 81.6 83 56.6
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 1.4e-13 80.5 172 35.5
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 2.3e-13 79.7 102 49.0
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 6.7e-13 78.2 77 62.3
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 1.1e-12 77.4 87 57.5
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 2.5e-12 76.3 97 48.5
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 3.3e-12 75.9 147 42.9
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 4.3e-12 75.5 50 72.0
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 4.3e-12 75.5 181 35.4
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 6.3e-11 71.6 161 36.6
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 8.2e-11 71.2 162 35.8
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 2.4e-10 69.7 134 56.0
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 6.9e-10 68.2 147 49.7
Potri.009G036600 Populus trichocarpa HOM05D008943 ORTHO05D010477 5.0e-08 62.0 42 73.8
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 6.5e-08 61.6 80 52.5
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 8.5e-08 61.2 76 56.6
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.4e-07 60.5 80 51.2
CBR_g4751 Chara braunii HOM05D007065 ORTHO05D008960 7.2e-07 58.2 80 42.5
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 9.4e-07 57.8 104 40.4


User provided reference genes

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