Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.5e-198 694.9 381 100.0
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 9.3e-127 457.6 321 84.1
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 4.1e-122 442.2 378 72.0
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.5e-121 440.3 327 79.8
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 8.5e-120 434.5 321 78.2
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.2e-119 431.4 321 76.9
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 7.2e-119 431.4 321 77.3
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 7.2e-119 431.4 321 77.9
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.2e-119 431.4 321 77.9
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.1e-118 429.9 321 77.6
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.7e-118 429.5 321 77.9
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 2.7e-118 429.5 321 77.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.0e-117 427.6 321 77.6
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.0e-117 427.6 321 77.3
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.0e-117 427.6 321 77.3
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.0e-117 427.6 321 78.5
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.0e-117 427.6 322 77.0
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.0e-117 427.6 321 77.3
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.4e-117 427.2 321 77.6
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.8e-117 426.8 321 77.6
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.3e-117 426.4 321 77.3
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 3.0e-117 426.0 321 76.9
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.9e-117 425.6 321 76.9
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.1e-117 425.2 321 76.9
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 5.1e-117 425.2 321 76.6
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 6.7e-117 424.9 321 76.6
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 6.7e-117 424.9 321 76.9
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.1e-116 424.1 321 76.9
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.1e-116 424.1 321 75.7
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.5e-116 423.7 321 76.6
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.0e-116 423.3 321 78.5
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-116 422.2 321 75.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 7.4e-116 421.4 321 75.1
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 7.4e-116 421.4 321 75.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 9.7e-116 421.0 321 74.8
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 2.2e-115 419.9 321 76.3
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 3.7e-115 419.1 321 75.4
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 3.7e-115 419.1 321 75.7
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 4.8e-115 418.7 321 75.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.4e-114 416.4 321 73.8
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 3.1e-114 416.0 321 74.8
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 5.3e-114 415.2 321 76.0
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 6.9e-114 414.8 321 73.8
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 9.1e-114 414.5 322 75.5
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.2e-113 414.1 320 75.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.5e-113 413.7 321 75.4
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.5e-113 413.7 321 74.5
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.6e-113 412.9 321 74.1
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 3.4e-113 412.5 321 73.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 4.5e-113 412.1 321 74.5
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 5.9e-113 411.8 318 74.2
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 5.9e-113 411.8 321 74.1
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 5.9e-113 411.8 321 74.1
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 5.9e-113 411.8 321 74.1
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 7.7e-113 411.4 321 74.5
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 7.7e-113 411.4 321 76.0
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 7.7e-113 411.4 345 70.1
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 2.2e-112 409.8 318 73.9
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 5.0e-112 408.7 321 73.8
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.1e-111 407.5 320 75.0
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.4e-111 407.1 321 73.2
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 3.2e-111 406.0 321 75.1
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 5.5e-111 405.2 321 72.6
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.2e-110 404.1 321 72.3
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.1e-110 401.7 321 74.1
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 6.1e-110 401.7 321 72.9
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 7.9e-110 401.4 305 76.7
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.0e-109 399.4 321 72.6
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 3.0e-109 399.4 321 72.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 8.8e-109 397.9 324 70.4
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.5e-108 397.1 319 72.7
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 2.6e-108 396.4 319 72.7
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 2.6e-108 396.4 319 72.7
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.4e-108 395.6 327 70.6
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.3e-107 394.0 321 68.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.2e-107 393.3 321 74.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.7e-107 392.5 324 72.8
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 8.2e-107 391.3 321 72.6
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 9.1e-106 387.9 334 71.6
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 3.5e-105 386.0 321 72.0
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 5.9e-105 385.2 305 72.5
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.7e-104 383.6 305 72.1
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.0e-104 382.1 318 72.3
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 5.0e-104 382.1 322 71.4
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.1e-103 380.9 321 70.1
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 5.5e-103 378.6 321 70.1
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 9.4e-103 377.9 314 72.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 6.7e-101 371.7 343 63.0
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.1e-100 370.9 308 72.4
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.1e-100 370.9 317 68.5
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.0e-100 370.2 319 67.7
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.6e-100 369.8 348 64.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.3e-100 369.4 318 64.8
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.7e-99 367.1 299 73.2
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.1e-98 364.4 322 67.1
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.1e-98 364.4 321 69.5
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.4e-98 364.0 313 66.1
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.4e-98 363.2 322 67.4
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 4.1e-98 362.5 300 70.0
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 5.3e-98 362.1 304 70.7
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 4.5e-97 359.0 300 71.3
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.2e-95 352.8 319 66.8
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 4.2e-95 352.4 360 58.6
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 8.0e-94 348.2 306 67.0
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.0e-93 347.8 326 67.2
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 3.4e-92 342.8 274 72.6
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.4e-90 336.7 274 73.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 3.5e-89 332.8 266 74.4
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 2.3e-85 320.1 266 71.1
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 5.7e-84 315.5 322 56.5
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 9.8e-84 314.7 312 61.5
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.4e-82 310.8 292 65.1
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.4e-82 310.8 292 65.1
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.4e-82 310.1 321 57.6
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.1e-82 309.3 357 57.7
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.1e-79 301.2 268 69.4
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 6.1e-78 295.4 325 57.2
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 2.3e-77 293.5 318 54.1
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 8.9e-77 291.6 332 55.4
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-74 283.9 318 56.9
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-73 280.4 318 56.6
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 4.3e-71 272.7 290 56.2
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.7e-65 253.4 323 48.6
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 7.5e-60 235.3 324 47.8
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.3e-59 234.6 231 61.9
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.3e-59 234.6 156 76.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.0e-56 224.9 145 86.9
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.5e-55 220.3 129 86.8
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-50 204.5 225 60.0
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.6e-49 201.1 182 64.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 4.0e-45 186.4 176 60.2
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.2e-41 174.9 97 90.7
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.7e-40 171.0 344 39.2
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 4.4e-36 156.4 102 78.4
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 1.1e-34 151.8 86 89.5
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 3.2e-34 150.2 84 90.5
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 5.1e-32 142.9 95 78.9
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.3e-29 132.9 74 91.9
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.3e-29 132.9 74 91.9
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.2e-28 131.7 80 82.5
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 2.6e-28 130.6 80 81.2
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.1e-18 95.9 76 80.3
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.3e-16 91.7 308 30.2
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-16 90.9 76 73.7
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 5.1e-16 89.7 57 77.2
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.1e-14 84.3 71 71.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.4e-13 81.6 70 67.1
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-12 78.2 202 35.1
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 3.4e-12 77.0 46 82.6
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 3.4e-12 77.0 50 72.0
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 2.9e-11 73.9 194 30.4
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 2.9e-11 73.9 43 83.7
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 3.8e-11 73.6 202 33.2
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.0e-11 73.2 46 80.4
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 8.4e-11 72.4 223 33.6
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.2e-09 68.6 200 29.0
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.9e-09 65.9 199 29.1
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.8e-08 64.7 202 29.7


User provided reference genes

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