Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 5.4e-72 274.2 141 100.0
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 6.7e-38 161.0 88 95.5
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 2.5e-32 142.5 97 76.3
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 3.2e-32 142.1 101 73.3
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 4.2e-32 141.7 101 72.3
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 4.2e-32 141.7 99 75.8
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 1.2e-31 140.2 98 74.5
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 2.7e-31 139.0 98 73.5
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 2.7e-31 139.0 98 73.5
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 2.7e-31 139.0 101 74.3
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 4.6e-31 138.3 101 73.3
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 7.9e-31 137.5 99 76.8
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 7.9e-31 137.5 98 74.5
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 7.9e-31 137.5 95 77.9
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 7.9e-31 137.5 101 73.3
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 1.0e-30 137.1 100 73.0
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 1.0e-30 137.1 101 71.3
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 1.0e-30 137.1 101 73.3
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 3.0e-30 135.6 95 71.6
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 3.9e-30 135.2 94 75.5
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 3.9e-30 135.2 94 75.5
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 5.1e-30 134.8 98 71.4
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 5.1e-30 134.8 94 75.5
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 5.1e-30 134.8 93 77.4
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 6.7e-30 134.4 95 74.7
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 8.7e-30 134.0 101 71.3
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 1.1e-29 133.7 104 69.2
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 1.5e-29 133.3 98 69.4
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 1.9e-29 132.9 90 78.9
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 1.9e-29 132.9 94 74.5
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 1.9e-29 132.9 95 73.7
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 1.9e-29 132.9 95 73.7
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 2.5e-29 132.5 93 75.3
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 3.3e-29 132.1 93 71.0
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 5.7e-29 131.3 90 77.8
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 9.7e-29 130.6 92 72.8
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 9.7e-29 130.6 94 72.3
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 1.6e-28 129.8 95 72.6
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 2.2e-28 129.4 88 75.0
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 3.7e-28 128.6 93 72.0
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 3.7e-28 128.6 89 74.2
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 3.7e-28 128.6 99 68.7
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 8.2e-28 127.5 88 76.1
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 1.1e-27 127.1 91 70.3
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 1.1e-27 127.1 69 92.8
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.4e-27 126.7 86 75.6
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 1.8e-27 126.3 91 73.6
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 2.4e-27 125.9 97 67.0
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 3.1e-27 125.6 94 70.2
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 3.1e-27 125.6 91 69.2
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 4.1e-27 125.2 91 71.4
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 5.3e-27 124.8 88 71.6
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 1.5e-26 123.2 86 76.7
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 1.5e-26 123.2 88 71.6
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 1.5e-26 123.2 91 70.3
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 1.5e-26 123.2 97 68.0
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 2.6e-26 122.5 87 70.1
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 3.4e-26 122.1 83 73.5
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 4.5e-26 121.7 83 73.5
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 7.7e-26 120.9 78 80.8
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 1.0e-25 120.6 89 69.7
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.3e-25 120.2 94 64.9
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 1.3e-25 120.2 94 64.9
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 1.7e-25 119.8 89 70.8
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 1.7e-25 119.8 81 75.3
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 2.2e-25 119.4 92 67.4
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 2.2e-25 119.4 83 73.5
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 2.2e-25 119.4 94 69.1
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 5.0e-25 118.2 89 70.8
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 5.0e-25 118.2 84 70.2
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 5.0e-25 118.2 85 71.8
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 5.0e-25 118.2 94 68.1
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 6.5e-25 117.9 89 67.4
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 8.5e-25 117.5 97 63.9
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 1.1e-24 117.1 89 68.5
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 1.1e-24 117.1 84 70.2
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 1.1e-24 117.1 84 70.2
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 1.4e-24 116.7 97 62.9
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 1.9e-24 116.3 83 66.3
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 3.2e-24 115.5 89 68.5
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 4.2e-24 115.2 80 71.2
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 5.5e-24 114.8 94 66.0
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 1.2e-23 113.6 80 70.0
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 1.6e-23 113.2 89 67.4
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 1.6e-23 113.2 85 69.4
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 1.6e-23 113.2 85 69.4
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 1.6e-23 113.2 94 64.9
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 2.1e-23 112.8 85 69.4
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 2.7e-23 112.5 88 65.9
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 2.7e-23 112.5 87 64.4
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 3.6e-23 112.1 85 68.2
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 3.6e-23 112.1 80 72.5
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 4.6e-23 111.7 88 65.9
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 7.9e-23 110.9 94 66.0
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 1.0e-22 110.5 87 62.1
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 1.5e-21 106.7 74 70.3
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 2.0e-21 106.3 89 61.8
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 2.6e-21 105.9 91 62.6
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 7.4e-21 104.4 83 61.4
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.1e-19 100.5 68 73.5
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 1.4e-19 100.1 87 57.5
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 1.4e-19 100.1 71 76.1
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 5.3e-19 98.2 74 70.3
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 9.1e-19 97.4 81 60.5
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 2.2e-17 92.8 77 66.2
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-17 92.8 66 69.7
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 6.5e-17 91.3 76 60.5
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 2.3e-14 82.8 72 58.3
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 6.7e-14 81.3 67 65.7
MCO05G024 Micromonas commoda HOM05D007049 ORTHO05D008896 1.1e-08 63.9 83 41.0
Lsat_1_v5_gn_1_45401 Lactuca sativa HOM05D007049 ORTHO05D008896 8.0e-07 57.8 41 65.9


User provided reference genes

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