Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 4.5e-200 701.0 357 100.0
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.1e-100 370.9 357 59.9
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.0e-95 352.4 357 57.1
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.0e-95 352.4 357 57.1
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 5.4e-92 342.0 357 55.7
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 9.1e-92 341.3 357 55.7
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.2e-86 324.3 365 54.2
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 1.3e-85 320.9 356 52.0
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.2e-83 314.3 357 52.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.6e-83 313.9 357 50.7
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.1e-81 307.8 358 51.7
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.9e-81 307.0 357 50.7
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 3.3e-81 306.2 358 51.4
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 9.5e-81 304.7 358 51.4
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 9.5e-81 304.7 357 50.7
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.6e-80 303.9 363 49.9
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.6e-80 303.9 357 49.9
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.0e-79 301.2 352 50.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.2e-78 297.7 345 50.7
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 2.6e-78 296.6 357 48.5
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 3.4e-78 296.2 362 49.4
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 4.4e-78 295.8 357 48.2
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 4.4e-78 295.8 356 48.3
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 5.7e-78 295.4 357 48.5
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 5.7e-78 295.4 358 49.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 2.2e-77 293.5 359 47.4
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 2.2e-77 293.5 345 49.6
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 3.7e-77 292.7 357 48.7
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.7e-77 292.7 352 48.0
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 6.4e-77 292.0 357 47.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.4e-77 292.0 357 49.3
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 8.3e-77 291.6 357 49.3
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.1e-76 291.2 353 47.0
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.1e-76 291.2 357 49.0
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.8e-76 290.4 357 49.0
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 2.4e-76 290.0 369 48.0
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 4.1e-76 289.3 359 46.0
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 4.1e-76 289.3 357 48.7
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 5.4e-76 288.9 357 48.5
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 9.2e-76 288.1 361 47.6
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.0e-74 284.6 358 46.1
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.0e-74 284.6 357 46.5
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.7e-74 283.9 352 47.4
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 1.7e-74 283.9 357 46.2
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.7e-74 283.9 353 47.3
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.7e-74 283.9 359 46.5
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 5.0e-74 282.3 358 46.1
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 8.6e-74 281.6 357 48.2
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.3e-73 279.3 357 47.9
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 5.6e-73 278.9 357 45.4
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 5.6e-73 278.9 357 46.2
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 7.3e-73 278.5 351 46.2
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 7.3e-73 278.5 357 45.9
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 7.3e-73 278.5 357 45.9
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.6e-72 277.3 357 45.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 2.1e-72 276.9 357 45.4
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.8e-72 276.6 356 44.9
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.8e-72 276.6 351 46.7
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 4.7e-72 275.8 355 45.6
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 4.7e-72 275.8 359 45.1
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 8.0e-72 275.0 357 45.1
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.0e-71 274.6 351 45.6
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.0e-71 274.6 357 47.6
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.4e-71 274.2 351 45.9
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.4e-71 274.2 355 45.6
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.3e-71 273.5 357 45.1
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 2.3e-71 273.5 360 46.1
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 3.1e-71 273.1 356 44.9
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 5.2e-71 272.3 358 46.1
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.2e-70 271.2 359 45.1
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.5e-70 270.8 349 47.3
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 9.8e-70 268.1 350 44.6
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.2e-69 266.9 361 45.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 2.9e-69 266.5 357 44.5
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 2.9e-69 266.5 357 44.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.9e-68 263.8 357 45.1
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.9e-68 263.8 353 43.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 7.0e-68 261.9 357 44.5
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.6e-67 260.8 357 42.0
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.6e-67 260.8 358 44.7
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.0e-67 260.4 353 43.9
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.0e-67 260.4 353 43.3
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 2.7e-67 260.0 352 44.3
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 2.7e-67 260.0 356 44.7
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 3.5e-67 259.6 340 45.9
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 6.0e-67 258.8 360 45.0
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.0e-67 258.8 358 42.7
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.0e-66 258.1 364 42.3
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 2.3e-66 256.9 343 42.6
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.9e-66 256.1 364 42.3
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 3.9e-66 256.1 364 42.3
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 6.6e-66 255.4 353 43.9
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 6.6e-66 255.4 356 42.7
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.9e-65 253.8 359 42.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 2.5e-65 253.4 357 42.6
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 2.5e-65 253.4 353 43.1
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 9.5e-65 251.5 361 42.4
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.8e-63 247.3 357 42.9
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.3e-63 246.9 353 42.2
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 4.0e-63 246.1 353 42.2
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 8.9e-63 245.0 353 42.5
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.3e-61 241.1 357 42.0
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.2e-61 240.4 350 41.7
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 2.2e-61 240.4 357 40.9
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 8.3e-61 238.4 355 39.7
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.4e-60 237.7 351 41.3
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.4e-60 237.7 354 39.8
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.2e-60 236.5 354 40.7
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 9.2e-60 235.0 351 41.3
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 9.2e-60 235.0 356 40.2
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.2e-59 234.6 350 40.3
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.6e-59 234.2 356 40.2
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 2.7e-59 233.4 357 41.5
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.1e-57 228.0 353 38.8
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 4.3e-57 226.1 351 38.5
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.3e-57 226.1 353 38.2
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 7.3e-57 225.3 356 39.6
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.1e-56 223.8 352 38.1
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 8.1e-56 221.9 356 38.2
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 7.6e-54 215.3 351 36.5
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.1e-52 211.5 305 43.6
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.1e-52 211.5 351 35.3
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.5e-49 201.1 355 38.9
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.6e-48 197.6 285 42.5
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.1e-47 194.9 119 84.0
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.3e-45 188.0 284 40.8
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.3e-45 188.0 117 78.6
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 4.9e-45 186.0 118 76.3
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 1.1e-44 184.9 112 77.7
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 9.3e-44 181.8 284 40.1
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 4.6e-43 179.5 285 38.9
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 6.0e-43 179.1 108 78.7
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.7e-42 177.6 119 73.9
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 8.7e-42 175.3 108 75.0
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 8.7e-42 175.3 108 75.0
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 2.8e-40 170.2 118 73.7
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-39 168.3 117 76.9
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.4e-39 167.9 121 71.9
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 3.1e-39 166.8 309 36.2
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 9.0e-39 165.2 101 76.2
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 4.2e-36 156.4 118 69.5
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-35 154.5 95 77.9
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 7.9e-35 152.1 296 35.1
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 3.0e-34 150.2 85 82.4
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.2e-30 138.3 88 76.1
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 5.8e-30 136.0 331 32.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.9e-29 133.7 107 65.4
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 4.8e-16 89.7 112 35.7
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 4.8e-16 89.7 57 78.9
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 5.9e-14 82.8 56 75.0
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.2e-11 75.1 49 75.5
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.5e-09 68.2 76 44.7
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 7.4e-09 65.9 89 46.1


User provided reference genes

Program Settings